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Hirn, J., Garcia, J. E., Montesinos-Navarro, A., Sanchez-Martin, R., Sanz, V., & Verdu, M. (2022). A deep Generative Artificial Intelligence system to predict species coexistence patterns. Methods Ecol. Evol., 13, 1052–1061.
Abstract: Predicting coexistence patterns is a current challenge to understand diversity maintenance, especially in rich communities where these patterns' complexity is magnified through indirect interactions that prevent their approximation with classical experimental approaches. We explore cutting-edge Machine Learning techniques called Generative Artificial Intelligence (GenAI) to predict species coexistence patterns in vegetation patches, training generative adversarial networks (GAN) and variational AutoEncoders (VAE) that are then used to unravel some of the mechanisms behind community assemblage. The GAN accurately reproduces real patches' species composition and plant species' affinity to different soil types, and the VAE also reaches a high level of accuracy, above 99%. Using the artificially generated patches, we found that high-order interactions tend to suppress the positive effects of low-order interactions. Finally, by reconstructing successional trajectories, we could identify the pioneer species with larger potential to generate a high diversity of distinct patches in terms of species composition. Understanding the complexity of species coexistence patterns in diverse ecological communities requires new approaches beyond heuristic rules. Generative Artificial Intelligence can be a powerful tool to this end as it allows to overcome the inherent dimensionality of this challenge.
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Conde, D., Castillo, F. L., Escobar, C., García, C., Garcia Navarro, J. E., Sanz, V., et al. (2023). Forecasting Geomagnetic Storm Disturbances and Their Uncertainties Using Deep Learning. Space Weather, 21(11), e2023SW003474–27pp.
Abstract: Severe space weather produced by disturbed conditions on the Sun results in harmful effects both for humans in space and in high-latitude flights, and for technological systems such as spacecraft or communications. Also, geomagnetically induced currents (GICs) flowing on long ground-based conductors, such as power networks, potentially threaten critical infrastructures on Earth. The first step in developing an alarm system against GICs is to forecast them. This is a challenging task given the highly non-linear dependencies of the response of the magnetosphere to these perturbations. In the last few years, modern machine-learning models have shown to be very good at predicting magnetic activity indices. However, such complex models are on the one hand difficult to tune, and on the other hand they are known to bring along potentially large prediction uncertainties which are generally difficult to estimate. In this work we aim at predicting the SYM-H index characterizing geomagnetic storms multiple-hour ahead, using public interplanetary magnetic field (IMF) data from the Sun-Earth L1 Lagrange point and SYM-H data. We implement a type of machine-learning model called long short-term memory (LSTM) network. Our scope is to estimate the prediction uncertainties coming from a deep-learning model in the context of forecasting the SYM-H index. These uncertainties will be essential to set reliable alarm thresholds. The resulting uncertainties turn out to be sizable at the critical stages of the geomagnetic storms. Our methodology includes as well an efficient optimization of important hyper-parameters of the LSTM network and robustness tests.
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Garcia Navarro, J. E., Fernandez-Prieto, L. M., Villaseñor, A., Sanz, V., Ammirati, J. B., Diaz Suarez, E. A., et al. (2022). Performance of Deep Learning Pickers in Routine Network Processing Applications. Seismol. Res. Lett., 93, 2529–2542.
Abstract: Picking arrival times of P and S phases is a fundamental and time‐consuming task for the routine processing of seismic data acquired by permanent and temporary networks. A large number of automatic pickers have been developed, but to perform well they often require the tuning of multiple parameters to adapt them to each dataset. Despite the great advance in techniques, some problems remain, such as the difficulty to accurately pick S waves and earthquake recordings with a low signal‐to‐noise ratio. Recently, phase pickers based on deep learning (DL) have shown great potential for event identification and arrival‐time picking. However, the general adoption of these methods for the routine processing of monitoring networks has been held back by factors such as the availability of well‐documented software, computational resources, and a gap in knowledge of these methods. In this study, we evaluate recent available DL pickers for earthquake data, comparing the performance of several neural network architectures. We test the selected pickers using three datasets with different characteristics. We found that the analyzed DL pickers (generalized phase detection, PhaseNet, and EQTransformer) perform well in the three tested cases. They are very efficient at ignoring large‐amplitude transient noise and at picking S waves, a task that is often difficult even for experienced analysts. Nevertheless, the performance of the analyzed DL pickers varies widely in terms of sensitivity and false discovery rate, with some pickers missing a significant percentage of true picks and others producing a large number of false positives. There are also variations in run time between DL pickers, with some of them requiring significant resources to process large datasets. In spite of these drawbacks, we show that DL pickers can be used efficiently to process large seismic datasets and obtain results comparable or better than current standard procedures.
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Barenboim, G., Del Debbio, L., Hirn, J., & Sanz, V. (2024). Exploring how a generative AI interprets music. Neural Comput. Appl., 36, 17007–17022.
Abstract: We aim to investigate how closely neural networks (NNs) mimic human thinking. As a step in this direction, we study the behavior of artificial neuron(s) that fire most when the input data score high on some specific emergent concepts. In this paper, we focus on music, where the emergent concepts are those of rhythm, pitch and melody as commonly used by humans. As a black box to pry open, we focus on Google’s MusicVAE, a pre-trained NN that handles music tracks by encoding them in terms of 512 latent variables. We show that several hundreds of these latent variables are “irrelevant” in the sense that can be set to zero with minimal impact on the reconstruction accuracy. The remaining few dozens of latent variables can be sorted by order of relevance by comparing their variance. We show that the first few most relevant variables, and only those, correlate highly with dozens of human-defined measures that describe rhythm and pitch in music pieces, thereby efficiently encapsulating many of these human-understandable concepts in a few nonlinear variables.
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Sanchis-Lozano, M. A., & Sanz, V. (2024). Observable imprints of primordial gravitational waves on the temperature anisotropies of the cosmic microwave background. Phys. Rev. D, 109(6), 063529–11pp.
Abstract: We examine the contribution of tensor modes, in addition to the dominant scalar ones, on the temperature anisotropies of the cosmic microwave background (CMB). To this end, we analyze in detail the temperature two -point angular correlation function C(Theta) from the Planck 2018 dataset, focusing on large angles (Theta greater than or similar to 120 degrees) corresponding to small l multipoles. A hierarchical set of infrared cutoffs are naturally introduced to the scalar and tensor power spectra of the CMB by invoking an extra Kaluza-Klein spatial dimension compactifying at about the grand unified theory scale between the Planck epoch and the start of inflation. We associate this set of lower scalar and tensor cutoffs with the parity of the multipole expansion of the C(Theta) function. By fitting the Planck 2018 data we compute the multipole coefficients, thereby reproducing the well-known odd -parity preference in angular correlations seen by all three satellite missions: Cosmic Background Explorer, WMAP, and Planck. Our fits improve significantly once tensor modes are included in the analysis, hence providing a hint of the imprints of primordial gravitational waves on the temperature correlations observed in the CMB today. To conclude, we suggest a relationship between, on the one hand, the lack of (positive) large -angle correlations and the odd -parity dominance in the CMB and, on the other hand, the effect of primordial gravitational waves on the CMB temperature anisotropies.
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Huang, F., Sanz, V., Shu, J., & Xue, X. (2021). LIGO as a probe of dark sectors. Phys. Rev. D, 104(10), 095001–9pp.
Abstract: We show how current LIGO data is able to probe interesting theories beyond the Standard Model, particularly dark sectors where a dark Higgs boson triggers symmetry breaking via a first-order phase transition. We use publicly available LIGO O2 data to illustrate how these sectors, even if disconnected from the Standard Model, can be probed by gravitational wave detectors. We link the LIGO measurements with the model content and mass scale of the dark sector, finding that current O2 data are testing a broad set of scenarios that can be mapped into many different types of dark-sector models where the breaking of SU(N) theories with Nf fermions is triggered by a dark Higgs boson at scales ? similar or equal to 108-109 GeV with reasonable parameters for the scalar potential.
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Khosa, C. K., Mars, L., Richards, J., & Sanz, V. (2020). Convolutional neural networks for direct detection of dark matter. J. Phys. G, 47(9), 095201–20pp.
Abstract: The XENON1T experiment uses a time projection chamber (TPC) with liquid xenon to search for weakly interacting massive particles (WIMPs), a proposed dark matter particle, via direct detection. As this experiment relies on capturing rare events, the focus is on achieving a high recall of WIMP events. Hence the ability to distinguish between WIMP and the background is extremely important. To accomplish this, we suggest using convolutional neural networks (CNNs); a machine learning procedure mainly used in image recognition tasks. To explore this technique we use XENON collaboration open-source software to simulate the TPC graphical output of dark matter signals and main backgrounds. A CNN turns out to be a suitable tool for this purpose, as it can identify features in the images that differentiate the two types of events without the need to manipulate or remove data in order to focus on a particular region of the detector. We find that the CNN can distinguish between the dominant background events (ER) and 500 GeV WIMP events with a recall of 93.4%, precision of 81.2% and an accuracy of 87.2%.
Keywords: dark matter; dark matter detection; neural networks; xenon1T; WIMPs
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Hirn, J., Sanz, V., Garcia Navarro, J. E., Goberna, M., Montesinos-Navarro, A., Navarro-Cano, J. A., et al. (2024). Transfer learning of species co-occurrence patterns between plant communities. Ecol. Inform., 83, 102826–8pp.
Abstract: Aim: The use of neural networks (NNs) is spreading to all areas of life, and Ecology is no exception. However, the data-hungry nature of NNs can leave out many small, valuable datasets. Here we show how to apply transfer learning to rescue small datasets that can be invaluable in understanding patterns of species co-occurrence. Location: Semiarid plant communities in Spain and Me<acute accent>xico. Time period: 2016-2022. Major taxa studied: Angiosperms. Methods: Based on a large sample of plant species co-occurrence in vegetation patches in a semi-arid area of eastern Spain, we fit a generative artificial intelligence (AI) model that correctly reproduces which species live with which in these patches. Subsequently, we train the same type of model on two communities for which we only have smaller datasets (another semi-arid community in eastern Spain, and a tropical community in Mexico). Results: When we transfer the knowledge learnt from the large dataset directly to the other two, the predictions improve for the community more similar to our reference one. As for the more dissimilar community, improving the accuracy of the transfer requires a further tuning of the model to the local data. In particular, the knowledge transferred relates primarily to species frequency and, to a lesser extent, to their phylogenetic relationships, which are known to be determinants of species interaction patterns. Main conclusions: This AI-based approach can be performed for communities similar or not so similar to the reference community, opening the door to systematic transfer learning for accurate predictions on small datasets. Interestingly, this transfer operates by matching unrelated species between the origin and target datasets, implying that arbitrary datasets can then be transferred to, or even combined in order to augment each other, irrespective of the species involved, potentially allowing such models to be applied to a wide range of plant communities in different climates.
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Perez-Curbelo, J., Roser, J., Muñoz, E., Barrientos, L., Sanz, V., & Llosa, G. (2025). Improving Compton camera imaging of multi-energy radioactive sources by using machine learning algorithms for event selection. Radiat. Phys. Chem., 226, 112166–11pp.
Abstract: Event selection and background reduction for Compton camera imaging of multi-energy radioactive sources has been performed by employing neural networks. A Compton camera prototype with detectors made of LaBr3 crystals coupled to silicon photomultiplier arrays was used to acquire experimental data from a circular array of Na-22 sources. The prototype and two arrays of Na-22 sources were simulated with GATE v8.2 Monte Carlo code, to obtain data for neural network training. Neural network models were trained on simulated data for event classification. The optimum models were found by using Weights & Biases platform tools. The trained models were used to classify simulated and real data for selecting signal events and rejecting background prior to image reconstruction. The models performed well on simulated data. The image obtained with experimental data showed an improvement with respect to event selection with energy cuts. The method is promising for Compton camera imaging of multi-energy radioactive sources.
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Kasieczka, G. et al, & Sanz, V. (2021). The LHC Olympics 2020: a community challenge for anomaly detection in high energy physics. Rep. Prog. Phys., 84(12), 124201–64pp.
Abstract: A new paradigm for data-driven, model-agnostic new physics searches at colliders is emerging, and aims to leverage recent breakthroughs in anomaly detection and machine learning. In order to develop and benchmark new anomaly detection methods within this framework, it is essential to have standard datasets. To this end, we have created the LHC Olympics 2020, a community challenge accompanied by a set of simulated collider events. Participants in these Olympics have developed their methods using an R&D dataset and then tested them on black boxes: datasets with an unknown anomaly (or not). Methods made use of modern machine learning tools and were based on unsupervised learning (autoencoders, generative adversarial networks, normalizing flows), weakly supervised learning, and semi-supervised learning. This paper will review the LHC Olympics 2020 challenge, including an overview of the competition, a description of methods deployed in the competition, lessons learned from the experience, and implications for data analyses with future datasets as well as future colliders.
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