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KM3NeT Collaboration(Aiello, S. et al), Alves Garre, S., Calvo, D., Carretero, V., Garcia Soto, A., Gozzini, S. R., et al. (2024). Embedded software of the KM3NeT central logic board. Comput. Phys. Commun., 296, 109036–15pp. Abstract: The KM3NeT Collaboration is building and operating two deep sea neutrino telescopes at the bottom of the Mediterranean Sea. The telescopes consist of latices of photomultiplier tubes housed in pressure-resistant glass spheres, called digital optical modules and arranged in vertical detection units. The two main scientific goals are the determination of the neutrino mass ordering and the discovery and observation of high-energy neutrino sources in the Universe. Neutrinos are detected via the Cherenkov light, which is induced by charged particles originated in neutrino interactions. The photomultiplier tubes convert the Cherenkov light into electrical signals that are acquired and timestamped by the acquisition electronics. Each optical module houses the acquisition electronics for collecting and timestamping the photomultiplier signals with one nanosecond accuracy. Once finished, the two telescopes will have installed more than six thousand optical acquisition nodes, completing one of the more complex networks in the world in terms of operation and synchronization. The embedded software running in the acquisition nodes has been designed to provide a framework that will operate with different hardware versions and functionalities. The hardware will not be accessible once in operation, which complicates the embedded software architecture. The embedded software provides a set of tools to facilitate remote manageability of the deployed hardware, including safe reconfiguration of the firmware. This paper presents the architecture and the techniques, methods and implementation of the embedded software running in the acquisition nodes of the KM3NeT neutrino telescopes. Program summary Program title: Embedded software for the KM3NeT CLB CPC Library link to program files: https://doi.org/10.17632/s847hpsns4.1 Licensing provisions: GNU General Public License 3 Programming language: C Nature of problem: The challenge for the embedded software in the KM3NeT neutrino telescope lies in orchestrating the Digital Optical Modules (DOMs) to achieve the synchronized data acquisition of the incoming optical signals. The DOMs are the crucial component responsible for capturing neutrino interactions deep underwater. The embedded software must configure and precisely time the operation of each DOM. Any deviation or timing mismatch could compromise data integrity, undermining the scientific value of the experiment. Therefore, the embedded software plays a critical role in coordinating, synchronizing, and operating these modules, ensuring they work in unison to capture and process neutrino signals accurately, ultimately advancing our understanding of fundamental particles in the Universe. Solution method: The embedded software on the DOMs provides a solution based on a C-based bare-metal application, operating without a real-time embedded OS. It is loaded into the RAM during FPGA configuration, consuming less than 256 kB of RAM. The software architecture comprises two layers: system software and application. The former offers OS-like features, including a multitasking scheduler, firmware updates, peripheral drivers, a UDP-based network stack, and error handling utilities. The application layer contains a state machine ensuring consistent program states. It is navigated via slow control events, including external inputs and autonomous responses. Subsystems within the application code control specific acquisition electronics components via the associated driver abstractions. Additional comments including restrictions and unusual features: Due to the operation conditions of the neutrino telescope, where access is restricted, the embedded software implements a fail-safe procedure to reconfigure the firmware where the embedded software runs. Keywords: Embedded software; Neutrino detectors; Synchronization networks https://references.ific.uv.es/refbase/show.php?record=5961
Oliver, S., Rodriguez Bosca, S., & Gimenez-Alventosa, V. (2024). Enabling particle transport on CAD-based geometries for radiation simulations with penRed. Comput. Phys. Commun., 298, 109091–11pp. Abstract: Geometry construction is a fundamental aspect of any radiation transport simulation, regardless of the Monte Carlo code being used. Typically, this process is tedious, time-consuming, and error-prone. The conventional approach involves defining geometries using mathematical objects or surfaces. However, this method comes with several limitations, especially when dealing with complex models, particularly those with organic shapes. Furthermore, since each code employs its own format and methodology for defining geometries, sharing and reproducing simulations among researchers becomes a challenging task. Consequently, many codes have implemented support for simulating over geometries constructed via Computer-Aided Design (CAD) tools. Unfortunately, this feature is lacking in penRed and other PENELOPE physics-based codes. Therefore, the objective of this work is to implement such support within the penRed framework. New version program summary Program Title: Parallel Engine for Radiation Energy Deposition (penRed) CPC Library link to program files: https://doi.org/10.17632/rkw6tvtngy.2 Developer's repository link: https://github.com/PenRed/PenRed Code Ocean capsule: https://codeocean.com/capsule/1041417/tree Licensing provisions: GNU Affero General Public License v3 Programming language: C++ standard 2011. Journal reference of previous version: V. Gimenez-Alventosa, V. Gimenez Gomez, S. Oliver, PenRed: An extensible and parallel Monte-Carlo framework for radiation transport based on PENELOPE, Computer Physics Communications 267 (2021) 108065. doi:https://doi.org/10.1016/j.cpc.2021.108065. Does the new version supersede the previous version?: Yes Reasons for the new version: Implements the capability to simulate on CAD constructed geometries, among many other features and fixes. Summary of revisions: All changes applied through the code versions are summarized in the file CHANGELOG.md in the repository package. Nature of problem: While Monte Carlo codes have proven valuable in simulating complex radiation scenarios, they rely heavily on accurate geometrical representations. In the same way as many other Monte Carlo codes, penRed employs simple geometric quadric surfaces like planes, spheres and cylinders to define geometries. However, since these geometric models offer a certain level of flexibility, these representations have limitations when it comes to simulating highly intricate and irregular shapes. Anatomic structures, for example, require detailed representations of organs, tissues and bones, which are difficult to achieve using basic geometric objects. Similarly, complex devices or intricate mechanical systems may have designs that cannot be accurately represented within the constraints of such geometric models. Moreover, when the complexity of the model increases, geometry construction process becomes more difficult, tedious, time-consuming and error-prone [2]. Also, as each Monte Carlo geometry library uses its own format and construction method, reproducing the same geometry among different codes is a challenging task. Solution method: To face the problems stated above, the objective of this work is to implement the capability to simulate using irregular and adaptable meshed geometries in the penRed framework. This kind of meshes can be constructed using Computer-Aided Design (CAD) tools, the use of which is very widespread and streamline the design process. This feature has been implemented in a new geometry module named “MESH_BODY” specific for this kind of geometries. This one is freely available and usable within the official penRed package1. It can be used since penRed version 1.9.3b and above. Keywords: Radiation transport; PENELOPE physics; Monte Carlo simulation; PenRed; CAD; Triangular surface mesh https://references.ific.uv.es/refbase/show.php?record=6077
Zhang, X., Chang, C., & Gimeno, B. (2019). Multipactor Analysis in Circular Waveguides Excited by TM01 Mode. IEEE Trans. Electron Devices, 66(11), 4943–4951. Abstract: A series of detailed numerical simulations are used to investigate the properties ofmultipactor breakdown in circularwaveguidespropagating the TM01 mode. AMonte Carlo model is constructed to track the motion of the electrons, study the multipactor scenarios, and predict the multipactor thresholds. The theoretical and numerical analyses indicate that the product of the frequency and the gap (f . D) affects both the intensity of the ponderomotive force and its spatial distribution, which results from the nonuniformity of the radio frequency (RF) field and significantly influences the electrons' trajectoriesandmultipactor trends. The decrease in f . D results in a remarkable enhancement in the magnitude of the ponderomotive force, while the maximal intensity gradually moves toward the half radius R/2 area. Low values of f . D correspond to high ponderomotive potential, which sustains the short-range electrons and triggers the single-sidedmultipactor. In contrast, high values of f . D correspond to low ponderomotive potential, contributing to long-range electrons and exciting the double-sided multipactor. Fitting to the susceptibility diagram produces the border line and a modified f . D threshold of (f . D) th approximate to 338.4 GHz mm, which separates the susceptibility diagram into single-sided, double-sided, andmixed-sided zones. The initial electron energy influences their trajectories at high f . D and low RF power. This effect tends to dominate the multipactor behavior in the mixed-sided region. Keywords: Circular waveguide; multipactor; ponderomotive force; TM01 mode https://references.ific.uv.es/refbase/show.php?record=4191
Zhang, X., Xiao, Y. T., & Gimeno, B. (2020). Multipactor Suppression by a Resonant Static Magnetic Field on a Dielectric Surface. IEEE Trans. Electron Devices, 67(12), 5723–5728. Abstract: In this article, we study the suppression of the multipactor phenomenon on a dielectric surface by a resonant static magnetic field. A homemade Monte Carlo algorithm is developed for multipactor simulations on a dielectric surface driven by two orthogonal radio frequency (RF) electric field components. When the static magnetic field is perpendicular to the tangential and normal RF electric fields, it is shown that if the normal electric field lags the tangential electric field by pi/2, the superposition of the normal and tangential electric fields will trigger a gyro-acceleration of the electron cloud and restrain the multipactor discharge effectively. By contrast, when the normal electric field is in advance of the tangential electric field by pi/2, the difference between the normal and tangential electric fields drives gyro-motion of the electron cloud. Consequently, two enhanced discharge zones are inevitable. The suppression effects of the resonant static magnetic field that is parallel to the tangential RF electric field or to the normal RF electric field are also presented. Keywords: Radio frequency; Dielectrics; Magnetic resonance; Discharges (electric); Surface discharges; Surface waves; Electrostatics; Monte Carlo simulation; multipactor discharge; orthogonal waves; resonant static magnetic field; secondary electron yield https://references.ific.uv.es/refbase/show.php?record=4627
Gonzalez-Iglesias, D., Esperante, D., Gimeno, B., Blanch, C., Fuster-Martinez, N., Martinez-Reviriego, P., et al. (2023). Analysis of the Multipactor Effect in an RF Electron Gun Photoinjector. IEEE Trans. Electron Devices, 70(1), 288–295. Abstract: The objective of this work is the evaluation of the risk of suffering a multipactor discharge within an RF electron gun photoinjector. Photoinjectors are a type of source for intense electron beams, which are the main electron source for synchrotron light sources, such as free-electron lasers. The analyzed device consists of 1.6 cells and it has been designed to operate at the S-band. Besides, around the RF gun there is an emittance compensation solenoid, whose magnetic field prevents the growth of the electron beam emittance, and thus the degradation of the properties of the beam. The multipactor analysis is based on a set of numerical simulations by tracking the trajectories of the electron cloud in the cells of the device. To reach this aim, an in-house multipactor code was developed. Specifically, two different cases were explored: with the emittance compensation solenoid assumed to be off and with the emittance compensation solenoid in operation. For both the cases, multipactor simulations were carried out exploring different RF electric field amplitudes. Moreover, for a better understanding of the multipactor phenomenon, the resonant trajectories of the electrons and the growth rate of the electrons population are investigated. Keywords: Magnetic tunneling; Multipactor effect; photoinjector; RF breakdown; RF gun https://references.ific.uv.es/refbase/show.php?record=5427

KM3NeT Collaboration(Aiello, S. et al), Alves Garre, S., Calvo, D., Carretero, V., Garcia Soto, A., Gozzini, S. R., et al. (2024). Embedded software of the KM3NeT central logic board. Comput. Phys. Commun., 296, 109036–15pp.

Abstract: The KM3NeT Collaboration is building and operating two deep sea neutrino telescopes at the bottom of the Mediterranean Sea. The telescopes consist of latices of photomultiplier tubes housed in pressure-resistant glass spheres, called digital optical modules and arranged in vertical detection units. The two main scientific goals are the determination of the neutrino mass ordering and the discovery and observation of high-energy neutrino sources in the Universe. Neutrinos are detected via the Cherenkov light, which is induced by charged particles originated in neutrino interactions. The photomultiplier tubes convert the Cherenkov light into electrical signals that are acquired and timestamped by the acquisition electronics. Each optical module houses the acquisition electronics for collecting and timestamping the photomultiplier signals with one nanosecond accuracy. Once finished, the two telescopes will have installed more than six thousand optical acquisition nodes, completing one of the more complex networks in the world in terms of operation and synchronization. The embedded software running in the acquisition nodes has been designed to provide a framework that will operate with different hardware versions and functionalities. The hardware will not be accessible once in operation, which complicates the embedded software architecture. The embedded software provides a set of tools to facilitate remote manageability of the deployed hardware, including safe reconfiguration of the firmware. This paper presents the architecture and the techniques, methods and implementation of the embedded software running in the acquisition nodes of the KM3NeT neutrino telescopes. Program summary Program title: Embedded software for the KM3NeT CLB CPC Library link to program files: https://doi.org/10.17632/s847hpsns4.1 Licensing provisions: GNU General Public License 3 Programming language: C Nature of problem: The challenge for the embedded software in the KM3NeT neutrino telescope lies in orchestrating the Digital Optical Modules (DOMs) to achieve the synchronized data acquisition of the incoming optical signals. The DOMs are the crucial component responsible for capturing neutrino interactions deep underwater. The embedded software must configure and precisely time the operation of each DOM. Any deviation or timing mismatch could compromise data integrity, undermining the scientific value of the experiment. Therefore, the embedded software plays a critical role in coordinating, synchronizing, and operating these modules, ensuring they work in unison to capture and process neutrino signals accurately, ultimately advancing our understanding of fundamental particles in the Universe. Solution method: The embedded software on the DOMs provides a solution based on a C-based bare-metal application, operating without a real-time embedded OS. It is loaded into the RAM during FPGA configuration, consuming less than 256 kB of RAM. The software architecture comprises two layers: system software and application. The former offers OS-like features, including a multitasking scheduler, firmware updates, peripheral drivers, a UDP-based network stack, and error handling utilities. The application layer contains a state machine ensuring consistent program states. It is navigated via slow control events, including external inputs and autonomous responses. Subsystems within the application code control specific acquisition electronics components via the associated driver abstractions. Additional comments including restrictions and unusual features: Due to the operation conditions of the neutrino telescope, where access is restricted, the embedded software implements a fail-safe procedure to reconfigure the firmware where the embedded software runs.

Keywords: Embedded software; Neutrino detectors; Synchronization networks

https://references.ific.uv.es/refbase/show.php?record=5961

Oliver, S., Rodriguez Bosca, S., & Gimenez-Alventosa, V. (2024). Enabling particle transport on CAD-based geometries for radiation simulations with penRed. Comput. Phys. Commun., 298, 109091–11pp.

Abstract: Geometry construction is a fundamental aspect of any radiation transport simulation, regardless of the Monte Carlo code being used. Typically, this process is tedious, time-consuming, and error-prone. The conventional approach involves defining geometries using mathematical objects or surfaces. However, this method comes with several limitations, especially when dealing with complex models, particularly those with organic shapes. Furthermore, since each code employs its own format and methodology for defining geometries, sharing and reproducing simulations among researchers becomes a challenging task. Consequently, many codes have implemented support for simulating over geometries constructed via Computer-Aided Design (CAD) tools. Unfortunately, this feature is lacking in penRed and other PENELOPE physics-based codes. Therefore, the objective of this work is to implement such support within the penRed framework. New version program summary Program Title: Parallel Engine for Radiation Energy Deposition (penRed) CPC Library link to program files: https://doi.org/10.17632/rkw6tvtngy.2 Developer's repository link: https://github.com/PenRed/PenRed Code Ocean capsule: https://codeocean.com/capsule/1041417/tree Licensing provisions: GNU Affero General Public License v3 Programming language: C++ standard 2011. Journal reference of previous version: V. Gimenez-Alventosa, V. Gimenez Gomez, S. Oliver, PenRed: An extensible and parallel Monte-Carlo framework for radiation transport based on PENELOPE, Computer Physics Communications 267 (2021) 108065. doi:https://doi.org/10.1016/j.cpc.2021.108065. Does the new version supersede the previous version?: Yes Reasons for the new version: Implements the capability to simulate on CAD constructed geometries, among many other features and fixes. Summary of revisions: All changes applied through the code versions are summarized in the file CHANGELOG.md in the repository package. Nature of problem: While Monte Carlo codes have proven valuable in simulating complex radiation scenarios, they rely heavily on accurate geometrical representations. In the same way as many other Monte Carlo codes, penRed employs simple geometric quadric surfaces like planes, spheres and cylinders to define geometries. However, since these geometric models offer a certain level of flexibility, these representations have limitations when it comes to simulating highly intricate and irregular shapes. Anatomic structures, for example, require detailed representations of organs, tissues and bones, which are difficult to achieve using basic geometric objects. Similarly, complex devices or intricate mechanical systems may have designs that cannot be accurately represented within the constraints of such geometric models. Moreover, when the complexity of the model increases, geometry construction process becomes more difficult, tedious, time-consuming and error-prone [2]. Also, as each Monte Carlo geometry library uses its own format and construction method, reproducing the same geometry among different codes is a challenging task. Solution method: To face the problems stated above, the objective of this work is to implement the capability to simulate using irregular and adaptable meshed geometries in the penRed framework. This kind of meshes can be constructed using Computer-Aided Design (CAD) tools, the use of which is very widespread and streamline the design process. This feature has been implemented in a new geometry module named “MESH_BODY” specific for this kind of geometries. This one is freely available and usable within the official penRed package1. It can be used since penRed version 1.9.3b and above.

Keywords: Radiation transport; PENELOPE physics; Monte Carlo simulation; PenRed; CAD; Triangular surface mesh

https://references.ific.uv.es/refbase/show.php?record=6077

Zhang, X., Chang, C., & Gimeno, B. (2019). Multipactor Analysis in Circular Waveguides Excited by TM01 Mode. IEEE Trans. Electron Devices, 66(11), 4943–4951.

Zhang, X., Xiao, Y. T., & Gimeno, B. (2020). Multipactor Suppression by a Resonant Static Magnetic Field on a Dielectric Surface. IEEE Trans. Electron Devices, 67(12), 5723–5728.

Gonzalez-Iglesias, D., Esperante, D., Gimeno, B., Blanch, C., Fuster-Martinez, N., Martinez-Reviriego, P., et al. (2023). Analysis of the Multipactor Effect in an RF Electron Gun Photoinjector. IEEE Trans. Electron Devices, 70(1), 288–295.