Abstract: The Minimal Supersymmetric Extension of the Standard Model (MSSM) is able to explain the current data from neutrino physics. Unfortunately Split Supersymmetry as low energy approximation of this theory fails to generate a solar square mass difference, including after the addition of bilinear R-Parity Violation. In this work, it is shown how one can derive an effective low energy theory from the MSSM in the spirit of Split Supersymmetry, which has the potential of explaining the neutrino phenomenology. This is achieved by going beyond leading order in the process of integrating out heavy scalars from the original theory, which results in non-renormalizable operators in the effective low energy theory. It is found that in particular a d = 8 operator is crucial for the generation of the neutrino mass differences.