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Bouhova-Thacker, E., Kostyukhin, V., Koffas, T., Liebig, W., Limper, M., Piacquadio, G. N., et al. (2010). Expected Performance of Vertex Reconstruction in the ATLAS Experiment at the LHC. IEEE Trans. Nucl. Sci., 57(2), 760–767.
Abstract: In the harsh environment of the Large Hadron Collider at CERN (design luminosity of 10(34) cm(-2) s(-1)) efficient reconstruction of vertices is crucial for many physics analyses. Described in this paper is the expected performance of the vertex reconstruction used in the ATLAS experiment. The algorithms for the reconstruction of primary and secondary vertices as well as for finding photon conversions and vertex reconstruction in jets are described. The implementation of vertex algorithms which follows a very modular design based on object-oriented C++ is presented. A user-friendly concept allows event reconstruction and physics analyses to compare and optimize their choice among different vertex reconstruction strategies. The performance of implemented algorithms has been studied on a variety of Monte Carlo samples and results are presented.
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Brzezinski, K., Oliver, J. F., Gillam, J., Rafecas, M., Studen, A., Grkovski, M., et al. (2016). Experimental evaluation of the resolution improvement provided by a silicon PET probe. J. Instrum., 11, P09016–13pp.
Abstract: A high-resolution PET system, which incorporates a silicon detector probe into a conventional PET scanner, has been proposed to obtain increased image quality in a limited region of interest. Detailed simulation studies have previously shown that the additional probe information improves the spatial resolution of the reconstructed image and increases lesion detectability, with no cost to other image quality measures. The current study expands on the previous work by using a laboratory prototype of the silicon PET-probe system to examine the resolution improvement in an experimental setting. Two different versions of the probe prototype were assessed, both consisting of a back-to-back pair of 1-mm thick silicon pad detectors, one arranged in 32 x 16 arrays of 1.4mm x 1.4mm pixels and the other in 40 x 26 arrays of 1.0mm x 1.0mm pixels. Each detector was read out by a set of VATAGP7 ASICs and a custom-designed data acquisition board which allowed trigger and data interfacing with the PET scanner, itself consisting of BGO block detectors segmented into 8 x 6 arrays of 6mm x 12mm x 30mm crystals. Limited-angle probe data was acquired from a group of Na-22 point-like sources in order to observe the maximum resolution achievable using the probe system. Data from a Derenzo-like resolution phantom was acquired, then scaled to obtain similar statistical quality as that of previous simulation studies. In this case, images were reconstructed using measurements of the PET ring alone and with the inclusion of the probe data. Images of the Na-22 source demonstrated a resolution of 1.5mm FWHM in the probe data, the PET ring resolution being approximately 6 mm. Profiles taken through the image of the Derenzo-like phantom showed a clear increase in spatial resolution. Improvements in peak-to-valley ratios of 50% and 38%, in the 4.8mm and 4.0mm phantom features respectively, were observed, while previously unresolvable 3.2mm features were brought to light by the addition of the probe. These results support the possibility of improving the image resolution of a clinical PET scanner using the silicon PET-probe.
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Carrio, F., Kim, H. Y., Moreno, P., Reed, R., Sandrock, C., Schettino, V., et al. (2014). Design of an FPGA-based embedded system for the ATLAS Tile Calorimeter front-end electronics test-bench. J. Instrum., 9, C03023–12pp.
Abstract: The portable test-bench for the certification of the ATLAS tile hadronic calorimeter front-end electronics has been redesigned for the present Long Shutdown (LS1) of LHC, improving its portability and expanding its functionalities. This paper presents a new test-bench based on a Xilinx Virtex-5 FPGA that implements an embedded system using a PowerPC 440 microprocessor hard core and custom IP cores. A light Linux version runs on the PowerPC microprocessor and handles the IP cores which implement the different functionalities needed to perform the desired tests such as TTCvi emulation, G-Link decoding, ADC control and data reception.
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Esteve, R., Toledo, J., Monrabal, F., Lorca, D., Serra, L., Mari, A., et al. (2012). The trigger system in the NEXT-DEMO detector. J. Instrum., 7, C12001–9pp.
Abstract: NEXT-DEMO is a prototype of NEXT (Neutrino Experiment with Xenon TPC), an experiment to search for neutrino-less double beta decay using a 100 kg radio-pure, 90 % enriched (136Xe isotope) high-pressure gaseous xenon TPC with electroluminescence readout. The detector is based on a PMT plane for energy measurements and a SiPM tracking plane for topological event filtering. The experiment will be located in the Canfranc Underground Laboratory in Spain. Front-end electronics, trigger and data-acquisition systems (DAQ) have been built. The DAQ is an implementation of the Scalable Readout System (RD51 collaboration) based on FPGA. Our approach for trigger is to have a distributed and reconfigurable system in the DAQ itself. Moreover, the trigger allows on-line triggering based on the detection of primary or secondary scintillation light, or a combination of both, that arrives to the PMT plane.
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Gololo, M. G. D., Carrio Argos, F., & Mellado, B. (2022). Tile Computer-on-Module for the ATLAS Tile Calorimeter Phase-II upgrades. J. Instrum., 17(6), P06020–14pp.
Abstract: The Tile PreProcessor (TilePPr) is the core element of the Tile Calorimeter (TileCal) off-detector electronics for High-luminosity Large Hadron Collider (HL-LHC). The TilePPr comprises FPGA-based boards to operate and read out the TileCal on-detector electronics. The Tile Computer on Module (TileCoM) mezzanine is embedded within TilePPr to carry out three main functionalities. These include remote configuration of on-detector electronics and TilePPr FPGAs, interface the TilePPr with the ATLAS Trigger and Data Acquisition (TDAQ) system, and interfacing the TilePPr with the ATLAS Detector Control System (DCS) by providing monitoring data. The TileCoM is a 10-layer board with a Zynq UltraScale+ ZU2CG for processing data, interface components to integrate with TilePPr and the power supply to be connected to the Advanced Telecommunication Computing Architecture carrier. A CentOS embedded Linux is deployed on the TileCoM to implement the required functionalities for the HL-LHC. In this paper we present the hardware and firmware developments of the TileCoM system in terms of remote programming, interface with ATLAS TDAQ system and DCS system.
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Mansour, I. R., Valdes-Cortez, C., Ayala Alvarez, D. S., Berumen, F., Côte, J. S., Ndoutoume-Paquet, G., et al. (2025). Reference datasets for commissioning of model-based dose calculation algorithms for electronic brachytherapy. Med. Phys., , 11pp.
Abstract: PurposeThis work provides the first two clinical test cases for commissioning electronic brachytherapy (eBT) model-based dose calculation algorithms (MBDCAs) for skin irradiation using surface applicators.Acquisition and Validation MethodsThe test cases utilize the INTRABEAM 30 mm surface applicator. Test Case I: water phantom is used to evaluate the algorithm's performance in a uniform medium consisting of a voxelized water cube surrounded by air. Test Case II: Surface eBT represents a heterogeneous medium with four distinct layers: skin tissue, adipose tissue, cortical bone, and soft tissue. Treatment plans for both cases were created and exported into the Radiance treatment planning system (TPS). Dose-to-medium calculations were then performed using this Monte Carlo (MC)-based TPS and compared with MC simulations conducted independently by three different groups using two codes: EGSnrc and PENELOPE. The results agreed within expected Type A and B statistical uncertainties.Data Format and Usage NotesThe dataset is available online at https://doi.org/10.52519/00005. A proprietary file designed for use within Radiance containing CT images and the treatment plan for both test cases, the LINAC modeling, and the CT calibration are included, as well as reference MC and TPS dose data in RTdose format and all files required to run the MC simulations.Potential ApplicationsThis dataset serves as a valuable resource for commissioning eBT MBDCAs and lays the groundwork for developing clinical test cases for other eBT systems. It is also a helpful educational tool for exploring various eBT devices and their advantages and drawbacks. Furthermore, brachytherapy researchers seeking a benchmark for dosimetric calculations in the low-energy domain will find this dataset indispensable.
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Mendez, V., Amoros, G., Garcia, F., & Salt, J. (2010). Emergent algorithms for replica location and selection in data grid. Futur. Gener. Comp. Syst., 26(7), 934–946.
Abstract: Grid infrastructures for e-Science projects are growing in magnitude terms. Improvements in data Grid replication algorithms may be critical in many of these infrastructures. This paper shows a decentralized replica optimization service, providing a general Emergent Artificial Intelligence (EAI) algorithm for the problem definition. Our aim is to set up a theoretical framework for emergent heuristics in Grid environments. Further, we describe two EAI approaches, the Particle Swarm Optimization PSO-Grid Multiswarm Federation and the Ant Colony Optimization ACO-Grid Asynchronous Colonies Optimization replica optimization algorithms, with some examples. We also present extended results with best performance and scalability features for PSO-Grid Multiswarrn Federation.
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NEXT Collaboration(Simon, A. et al), Gomez-Cadenas, J. J., Alvarez, V., Benlloch-Rodriguez, J. M., Botas, A., Carcel, S., et al. (2017). Application and performance of an ML-EM algorithm in NEXT. J. Instrum., 12, P08009–22pp.
Abstract: The goal of the NEXT experiment is the observation of neutrinoless double beta decay in Xe-136 using a gaseous xenon TPC with electroluminescent amplification and specialized photodetector arrays for calorimetry and tracking. The NEXT Collaboration is exploring a number of reconstruction algorithms to exploit the full potential of the detector. This paper describes one of them: the Maximum Likelihood Expectation Maximization (ML-EM) method, a generic iterative algorithm to find maximum-likelihood estimates of parameters that has been applied to solve many different types of complex inverse problems. In particular, we discuss a bi-dimensional version of the method in which the photosensor signals integrated over time are used to reconstruct a transverse projection of the event. First results show that, when applied to detector simulation data, the algorithm achieves nearly optimal energy resolution (better than 0.5% FWHM at the Q value of 136Xe) for events distributed over the full active volume of the TPC.
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Peppa, V., Thomson, R. M., Enger, S. A., Fonseca, G. P., Lee, C. N., Lucero, J. N. E., et al. (2023). A MC-based anthropomorphic test case for commissioning model-based dose calculation in interstitial breast 192-Ir HDR brachytherapy. Med. Phys., 50(7), 4675–4687.
Abstract: PurposeTo provide the first clinical test case for commissioning of Ir-192 brachytherapy model-based dose calculation algorithms (MBDCAs) according to the AAPM TG-186 report workflow. Acquisition and Validation MethodsA computational patient phantom model was generated from a clinical multi-catheter Ir-192 HDR breast brachytherapy case. Regions of interest (ROIs) were contoured and digitized on the patient CT images and the model was written to a series of DICOM CT images using MATLAB. The model was imported into two commercial treatment planning systems (TPSs) currently incorporating an MBDCA. Identical treatment plans were prepared using a generic Ir-192 HDR source and the TG-43-based algorithm of each TPS. This was followed by dose to medium in medium calculations using the MBDCA option of each TPS. Monte Carlo (MC) simulation was performed in the model using three different codes and information parsed from the treatment plan exported in DICOM radiation therapy (RT) format. Results were found to agree within statistical uncertainty and the dataset with the lowest uncertainty was assigned as the reference MC dose distribution. Data Format and Usage NotesThe dataset is available online at ,. Files include the treatment plan for each TPS in DICOM RT format, reference MC dose data in RT Dose format, as well as a guide for database users and all files necessary to repeat the MC simulations. Potential ApplicationsThe dataset facilitates the commissioning of brachytherapy MBDCAs using TPS embedded tools and establishes a methodology for the development of future clinical test cases. It is also useful to non-MBDCA adopters for intercomparing MBDCAs and exploring their benefits and limitations, as well as to brachytherapy researchers in need of a dosimetric and/or a DICOM RT information parsing benchmark. Limitations include specificity in terms of radionuclide, source model, clinical scenario, and MBDCA version used for its preparation.
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