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Fanchiotti, H., Garcia Canal, C. A., Mayosky, M., Veiga, A., & Vento, V. (2023). The Geometric Phase in Classical Systems and in the Equivalent Quantum Hermitian and Non-Hermitian PT-Symmetric Systems. Braz. J. Phys., 53(6), 143–11pp.
Abstract: The decomplexification procedure allows one to show mathematically (stricto sensu) the equivalence (isomorphism) between the quantum dynamics of a system with a finite number of basis states and a classical dynamics system. This unique way of connecting different dynamics was used in the past to analyze the relationship between the well-known geometric phase present in the quantum evolution discovered by Berry and its generalizations, with their analogs, the Hannay phases, in the classical domain. In here, this analysis is carried out for several quantum hermitian and non-hermitian PT-symmetric Hamiltonians and compared with the Hannay phase analysis in their classical isomorphic equivalent systems. As the equivalence ends in the classical domain with oscillator dynamics, we exploit the analogy to propose resonant electric circuits coupled with a gyrator, to reproduce the geometric phase coming from the theoretical solutions, in simulated laboratory experiments.
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Albiol, F., Corbi, A., & Albiol, A. (2017). Evaluation of modern camera calibration techniques for conventional diagnostic X-ray imaging settings. Radiol. Phys. Technol., 10(1), 68–81.
Abstract: We explore three different alternatives for obtaining intrinsic and extrinsic parameters in conventional diagnostic X-ray frameworks: the direct linear transform (DLT), the Zhang method, and the Tsai approach. We analyze and describe the computational, operational, and mathematical background differences for these algorithms when they are applied to ordinary radiograph acquisition. For our study, we developed an initial 3D calibration frame with tin cross-shaped fiducials at specific locations. The three studied methods enable the derivation of projection matrices from 3D to 2D point correlations. We propose a set of metrics to compare the efficiency of each technique. One of these metrics consists of the calculation of the detector pixel density, which can be also included as part of the quality control sequence in general X-ray settings. The results show a clear superiority of the DLT approach, both in accuracy and operational suitability. We paid special attention to the Zhang calibration method. Although this technique has been extensively implemented in the field of computer vision, it has rarely been tested in depth in common radiograph production scenarios. Zhang's approach can operate on much simpler and more affordable 2D calibration frames, which were also tested in our research. We experimentally confirm that even three or four plane-image correspondences achieve accurate focal lengths.
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Alioli, S., Fuster, J., Irles Quiles, A., Moch, S., Uwer, P., & Vos, M. (2012). A new observable to measure the top quark mass at hadron colliders. Pramana-J. Phys., 79(4), 809–812.
Abstract: The t (t) over bar + jet + X differential cross-section in proton-proton collisions at 7 TeV centre of mass energy is investigated with respect to its sensitivity to the top quark mass. The analysis includes higher order QCD corrections at NLO. The impact of the renormalization scale (mu(R)), the factorization (mu(F)) scale and of the choice of different proton's PDF (parton distribution function) has been evaluated. In this study it is concluded that differential jet rates offer a promising option for alternative mass measurements of the top quark, with theoretical uncertainties below 1 GeV.
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Trbojevich, R. A., Fernandez, A., Watanabe, F., Mustafa, T., & Bryant, M. S. (2016). Comparative study of silver nanoparticle permeation using Side-Bi-Side and Franz diffusion cells. J. Nanopart. Res., 18(3), 55–12pp.
Abstract: Better understanding the mechanisms of nanoparticle permeation through membranes and packaging polymers has important implications for the evaluation of drug transdermal uptake, in food safety and the environmental implications of nanotechnology. In this study, permeation of 21 nm diameter silver nanoparticles (AgNPs) was tested using Side-Bi-Side and Franz static diffusion cells through hydrophilic 0.1 and 0.05 lm pore diameter 125 μm thick synthetic cellulose membranes, and 16 and 120 μm thick low-density polyethylene (LDPE) films. Experiments performed with LDPE films discarded permeation of AgNPs or Ag ions over the investigated time-frame in both diffusion systems. But controlled release of AgNPs has been quantified using semipermeable hydrophilic membranes. The permeation followed a quasi-linear time-dependent model during the experimental time-frame, which represents surface reaction-limited permeation. Diffusive flux, diffusion coefficients, and membrane permeability were determined as a function of pore size and diffusion model. Concentration gradient and pore size were key to understand mass transfer phenomena in the diffusion systems.
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Ancilotto, F., Barranco, M., Navarro, J., & Pi, M. (2016). A Density Functional Approach to Para-hydrogen at Zero Temperature. J. Low Temp. Phys., 185(1-2), 26–38.
Abstract: We have developed a density functional (DF) built so as to reproduce either the metastable liquid or the solid equation of state of bulk para-hydrogen, as derived from quantum Monte Carlo zero temperature calculations. As an application, we have used it to study the structure and energetics of small para-hydrogen clusters made of up to molecules. We compare our results for liquid clusters with diffusion Monte Carlo (DMC) calculations and find a fair agreement between them. In particular, the transition found within DMC between hollow-core structures for small N values and center-filled structures at higher N values is reproduced. The present DF approach yields results for (pH) clusters indicating that for small N values a liquid-like character of the clusters prevails, while solid-like clusters are instead energetically favored for .
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Fernandez Casani, A., Orduña, J. M., Sanchez, J., & Gonzalez de la Hoz, S. (2021). A Reliable Large Distributed Object Store Based Platform for Collecting Event Metadata. J. Grid Comput., 19(3), 39–19pp.
Abstract: The Large Hadron Collider (LHC) is about to enter its third run at unprecedented energies. The experiments at the LHC face computational challenges with enormous data volumes that need to be analysed by thousands of physics users. The ATLAS EventIndex project, currently running in production, builds a complete catalogue of particle collisions, or events, for the ATLAS experiment at the LHC. The distributed nature of the experiment data model is exploited by running jobs at over one hundred Grid data centers worldwide. Millions of files with petabytes of data are indexed, extracting a small quantity of metadata per event, that is conveyed with a data collection system in real time to a central Hadoop instance at CERN. After a successful first implementation based on a messaging system, some issues suggested performance bottlenecks for the challenging higher rates in next runs of the experiment. In this work we characterize the weaknesses of the previous messaging system, regarding complexity, scalability, performance and resource consumption. A new approach based on an object-based storage method was designed and implemented, taking into account the lessons learned and leveraging the ATLAS experience with this kind of systems. We present the experiment that we run during three months in the real production scenario worldwide, in order to evaluate the messaging and object store approaches. The results of the experiment show that the new object-based storage method can efficiently support large-scale data collection for big data environments like the next runs of the ATLAS experiment at the LHC.
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Mendez, V., Amoros, G., & Kaci, M. (2011). A Decentralized Deployment Strategy and Performance Evaluation of LCG File Catalog Service. J. Grid Comput., 9(3), 345–354.
Abstract: The LHC Computing Grid (LCG) leads by CERN, has solved with the LCG File Catalog (LFC) the major problem of scaling the data management catalog. However, additional performance issues should be faced to deploy a painless catalog service. With this aim, we present a decentralized LFC server configuration, and its performance evaluation compared with the traditional LFC deployment. A performance analysis is shown, including not only the catalog server, but also analysing the client side overhead. We find that the LFC service has in the clients a relevant workload of the overall service. The experimental results show that the proposed LFC deployment for servers and clients, improves the performance of the service.
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Blanton, T. D., Romero-Lopez, F., & Sharpe, S. R. (2019). Implementing the three-particle quantization condition including higher partial waves. J. High Energy Phys., 03(3), 106–56pp.
Abstract: We present an implementation of the relativistic three-particle quantization condition including both s- and d-wave two-particle channels. For this, we develop a systematic expansion of the three-particle K matrix, K-df,K-3, about threshold, which is the generalization of the effective range expansion of the two-particle K matrix, K-2. Relativistic invariance plays an important role in this expansion. We find that d-wave two-particle channels enter first at quadratic order. We explain how to implement the resulting multichannel quantization condition, and present several examples of its application. We derive the leading dependence of the threshold three-particle state on the two-particle d-wave scattering amplitude, and use this to test our implementation. We show how strong two-particle d-wave interactions can lead to significant effects on the finite-volume three-particle spectrum, including the possibility of a generalized three-particle Efimov-like bound state. We also explore the application to the 3 pi(+) system, which is accessible to lattice QCD simulations, where we study the sensitivity of the spectrum to the components of K-df,K-3. Finally, we investigate the circumstances under which the quantization condition has unphysical solutions.
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SCiMMA and SNEWS Collaborations(Baxter, A. L. et al), & Colomer, M. (2022). Collaborative experience between scientific software projects using Agile Scrum development. Softw.-Pract. Exp., 52, 2077–2096.
Abstract: Developing sustainable software for the scientific community requires expertise in software engineering and domain science. This can be challenging due to the unique needs of scientific software, the insufficient resources for software engineering practices in the scientific community, and the complexity of developing for evolving scientific contexts. While open-source software can partially address these concerns, it can introduce complicating dependencies and delay development. These issues can be reduced if scientists and software developers collaborate. We present a case study wherein scientists from the SuperNova Early Warning System collaborated with software developers from the Scalable Cyberinfrastructure for Multi-Messenger Astrophysics project. The collaboration addressed the difficulties of open-source software development, but presented additional risks to each team. For the scientists, there was a concern of relying on external systems and lacking control in the development process. For the developers, there was a risk in supporting a user-group while maintaining core development. These issues were mitigated by creating a second Agile Scrum framework in parallel with the developers' ongoing Agile Scrum process. This Agile collaboration promoted communication, ensured that the scientists had an active role in development, and allowed the developers to evaluate and implement the scientists' software requirements. The collaboration provided benefits for each group: the scientists actuated their development by using an existing platform, and the developers utilized the scientists' use-case to improve their systems. This case study suggests that scientists and software developers can avoid scientific computing issues by collaborating and that Agile Scrum methods can address emergent concerns.
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Navarro, J., & Guardiola, R. (2011). Thermal Effects on Small Para-Hydrogen Clusters. Int. J. Quantum Chem., 111(2), 463–471.
Abstract: A brief review of different quantum Monte Carlo simulations of small (p-H-2)(N) clusters is presented. The clusters are viewed as a set of N structureless p-H-2 molecules, interacting via an isotropic pairwise potential. Properties as superfluidity, magic numbers, radial structure, excitation spectra, and abundance production of (p-H-2)(N) clusters are discussed and, whenever possible, a comparison with He-4(N) droplets is presented. All together, the simulations indicate that temperature has a paradoxical effect of the properties of (p-H-2)(N) clusters, as they are solid-like at high T and liquid-like at low T, due to quantum delocalization at the lowest temperature.
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