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Author |
Rodriguez-Alvarez, M.J.; Sanchez, F.; Soriano, A.; Iborra, A.; Mora, C. |
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Title |
Exploiting symmetries for weight matrix design in CT imaging |
Type |
Journal Article |
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Year |
2011 |
Publication |
Mathematical and Computer Modelling |
Abbreviated Journal |
Math. Comput. Model. |
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Volume |
54 |
Issue |
7-8 |
Pages |
1655-1664 |
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Keywords |
Computerized tomography imaging; Polar grid; System matrix; Rotation symmetries; ART |
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Abstract |
In this paper we propose several methods of constructing the system matrix (SM) of a Computed Tomography (CT) scanner with two objectives: (1) to construct SMs in the shortest possible time and store them in an ordinary PC without losing quality, (2) to analyze the possible applications of the proposed method to 3D, taking into account SMs' sizes, computing time and reconstructed image quality. In order to build the SM, we propose two new field of view (FOV) pixellation schemes, based on a polar coordinate system (polar grid) by taking advantage of the polar rotation symmetries of CT devices. Comparisons between the SMs proposed are performed using two phantom and a real CT-simulator images. Global error, contrast, noise and homogeneity of the reconstructed images are discussed. |
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Address |
[Rodriguez-Alvarez, MJ; Iborra, A; Mora, C] Univ Politecn Valencia, Inst Matemat Multidisciplinar, Valencia 46022, Spain, Email: mjrodri@imm.upv.es |
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Pergamon-Elsevier Science Ltd |
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English |
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ISSN |
0895-7177 |
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Notes |
WOS:000293269200007 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
no |
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Call Number |
IFIC @ elepoucu @ |
Serial |
708 |
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Author |
Rodriguez-Alvarez, M.J.; Sanchez, F.; Soriano, A.; Iborra, A. |
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Title |
Sparse Givens resolution of large system of linear equations: Applications to image reconstruction |
Type |
Journal Article |
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Year |
2010 |
Publication |
Mathematical and Computer Modelling |
Abbreviated Journal |
Math. Comput. Model. |
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Volume |
52 |
Issue |
7-8 |
Pages |
1258-1264 |
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Keywords |
Givens rotations; QR-factorization; Computed tomography; Image reconstruction |
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Abstract |
In medicine, computed tomographic images are reconstructed from a large number of measurements of X-ray transmission through the patient (projection data). The mathematical model used to describe a computed tomography device is a large system of linear equations of the form AX = B. In this paper we propose the QR decomposition as a direct method to solve the linear system. QR decomposition can be a large computational procedure. However, once it has been calculated for a specific system, matrices Q and R are stored and used for any acquired projection on that system. Implementation of the QR decomposition in order to take more advantage of the sparsity of the system matrix is discussed. |
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Address |
[Rodriguez-Alvarez, Maria-Jose; Iborra, Amadeo] Univ Politecn Valencia, Inst Matemat Multidisciplinar, E-46022 Valencia, Spain, Email: mjrodri@imm.upv.es |
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Pergamon-Elsevier Science Ltd |
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English |
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ISSN |
0895-7177 |
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Notes |
ISI:000280933700043 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
no |
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Call Number |
IFIC @ elepoucu @ |
Serial |
395 |
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Author |
Fernandez, A.; Hufschmidt, D.; Colaux, J.L.; Valiente-Dobon, J.J.; Godinho, V.; Jimenez de Haro, M.C.; Feria, D.; Gadea, A.; Lucas, S. |
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Title |
Low gas consumption fabrication of He-3 solid targets for nuclear reactions |
Type |
Journal Article |
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Year |
2020 |
Publication |
Materials & Design |
Abbreviated Journal |
Mater. Des. |
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Volume |
186 |
Issue |
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Pages |
108337 - 10pp |
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Keywords |
He-3 solid targets; Quasistatic magnetron sputtering; Low gas consumption; Nuclear reactions; Inverse kinematics; Target stability |
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Abstract |
Nanoporous solids that stabilize trapped gas nanobubbles open new possibilities to fabricate solid targets for nuclear reactions. A methodology is described based on the magnetron sputtering (MS) technique operated under quasistatic flux conditions to produce such nanocomposites films with He-3 contents of up to 16 at.% in an amorphous-silicon matrix. In addition to the characteristic low pressure (3-6 Pa) needed for the gas discharge, the method ensures almost complete reduction of the process gas flow during film fabrication. The method could produce similar materials to those obtained under classical dynamic flux conditions for MS. The drastic reduction (>99.5%) of the gas consumption is fundamental for the fabrication of targets with scarce and expensive gases. Si:He-3 and W:He-3 targets are presented together with their microstructural (scanning and transmission electron microscopy, SEM and TEM respectively) and compositional (Ion Beam Analysis, IBA) characterization. The He-3 content achieved was over 1 x 10(18) at/cm(2) for film thicknesses between 1.5 and 3 μm for both Si and W matrices. First experiments to probe the stability of the targets for nuclear reaction studies in inverse kinematics configurations are presented. |
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Address |
[Fernandez, Asuncion; Hufschmidt, Dirk; Godinho, Vanda; Jimenez de Haro, Maria C.; Feria, David] Univ Seville, CSIC, Inst Ciencia Mat Sevilla, Avda Amer Vespucio 49, Seville 41092, Spain, Email: asuncion@icmse.csic.es |
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Publisher |
Elsevier Sci Ltd |
Place of Publication |
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English |
Summary Language |
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Original Title |
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Abbreviated Series Title |
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Edition |
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ISSN |
0264-1275 |
ISBN |
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Conference |
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Notes |
WOS:000505221700053 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
4239 |
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Author |
Lloret, E.; Picouet, P.A.; Trbojevich, R.; Fernandez, A. |
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Title |
Colour stability of cooked ham packed under modified atmospheres in polyamide nanocomposite blends |
Type |
Journal Article |
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Year |
2016 |
Publication |
Lwt-Food Science And Technology |
Abbreviated Journal |
LWT-Food Sci. Technol. |
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Volume |
66 |
Issue |
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Pages |
582-589 |
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Keywords |
Nylon; Cooked ham; Nanoclays; Oxygen permeation; Colour; Exfoliation; MAP |
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Abstract |
Two novel blends containing a low-density polyethylene (LDPE) and a neat polyamide (PA) or a polyamide nanocomposite (PAN) layers were fabricated and their technological potential was evaluated during the refrigeration of cooked ham in modified atmospheres (MAP). Nanoclays were homogeneously distributed and nearly exfoliated, and they lowered significantly the oxygen transmission rate (OTR) of the PAN films. Due to the lower OTR, the headspace oxygen level in PAN pouches do not rise above 0.26% but it approached 2% in PA pouches at day 20. The residual oxygen levels were key for colour change during MAP storage of cooked ham. Cooked ham redness and reflectivity were stable during 27 days in PAN pouches while a strong colour deterioration took place after day 7 in PA pouches. Other parameters such as moisture content and water activity remained unaltered, and pH development was related to microbial growth and independent of the packaging polymer. The evolution of cooked ham colour in PAN was comparable to a high-barrier commercial polymer, and was acceptable for commercial sale for 27 days, showing excellent perspectives for polyamide nanocomposites in the storage of cooked ham. |
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Address |
[Lloret, Elsa; Picouet, Pierre A.] IRTA, Dept Tecnol Dels Aliments, Monells, Girona, Spain, Email: velifdez@ific.uv.es |
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Corporate Author |
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Publisher |
Elsevier Science Bv |
Place of Publication |
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English |
Summary Language |
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Original Title |
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Abbreviated Series Title |
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ISSN |
0023-6438 |
ISBN |
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Conference |
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Notes |
WOS:000367413200079 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
2510 |
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Author |
Carrasco-Ribelles, L.A.; Pardo-Mas, J.R.; Tortajada, S.; Saez, C.; Valdivieso, B.; Garcia-Gomez, J.M. |
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Title |
Predicting morbidity by local similarities in multi-scale patient trajectories |
Type |
Journal Article |
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Year |
2021 |
Publication |
Journal of Biomedical Informatics |
Abbreviated Journal |
J. Biomed. Inform. |
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Volume |
120 |
Issue |
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Pages |
103837 - 9pp |
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Keywords |
Patient trajectory; Risk prediction; Local alignment; Dynamic programming; Diabetes; Cardiovascular disease |
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Abstract |
Patient Trajectories (PTs) are a method of representing the temporal evolution of patients. They can include information from different sources and be used in socio-medical or clinical domains. PTs have generally been used to generate and study the most common trajectories in, for instance, the development of a disease. On the other hand, healthcare predictive models generally rely on static snapshots of patient information. Only a few works about prediction in healthcare have been found that use PTs, and therefore benefit from their temporal dimension. All of them, however, have used PTs created from single-source information. Therefore, the use of longitudinal multi-scale data to build PTs and use them to obtain predictions about health conditions is yet to be explored. Our hypothesis is that local similarities on small chunks of PTs can identify similar patients concerning their future morbidities. The objectives of this work are (1) to develop a methodology to identify local similarities between PTs before the occurrence of morbidities to predict these on new query individuals; and (2) to validate this methodology on risk prediction of cardiovascular diseases (CVD) occurrence in patients with diabetes. We have proposed a novel formal definition of PTs based on sequences of longitudinal multi-scale data. Moreover, a dynamic programming methodology to identify local alignments on PTs for predicting future morbidities is proposed. Both the proposed methodology for PT definition and the alignment algorithm are generic to be applied on any clinical domain. We validated this solution for predicting CVD in patients with diabetes and we achieved a precision of 0.33, a recall of 0.72 and a specificity of 0.38. Therefore, the proposed solution in the diabetes use case can result of utmost utility to secondary screening. |
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Address |
[Carrasco-Ribelles, Lucia A.; Pardo-Mas, Jose Ramon; Saez, Carlos; Garcia-Gomez, Juan M.] Univ Politecn Valencia, Biomed Data Sci Lab BDSLAB, Inst Tecnol Informat & Comunicac ITACA, Camino Vera S-N, Valencia 46022, Spain, Email: lucarri@etsii.upv.es; |
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Corporate Author |
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Publisher |
Academic Press Inc Elsevier Science |
Place of Publication |
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Language |
English |
Summary Language |
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Original Title |
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Abbreviated Series Title |
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Edition |
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ISSN |
1532-0464 |
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Notes |
WOS:000683527500003 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
no |
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Call Number |
IFIC @ pastor @ |
Serial |
4934 |
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Author |
de Souza, P.M.; Muller, A.; Beniaich, A.; Mayer-Miebach, E.; Oehlke, K.; Stahl, M.; Greiner, R.; Fernandez, A. |
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Title |
Functional properties and nutritional composition of liquid egg products treated in a coiled tube UV-C reactor |
Type |
Journal Article |
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Year |
2015 |
Publication |
Innovative Food Science & Emerging Technologies |
Abbreviated Journal |
Innov. Food Sci. Emerg. Technol. |
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Volume |
32 |
Issue |
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Pages |
156-164 |
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Keywords |
Ultraviolet; Liquid egg; Vitamins; Functional properties; Foaming; UV-C; Dean vortex |
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Abstract |
Pasteurization of eggs has adverse effects on nutrient composition and functionality of egg proteins. UV processing is an alternative technology with potentially fewer adverse effects as it is less intrusive. Egg white, whole egg and egg yolk vitamins (A, B-2, B-5, C and E), minerals (P, Cl, K, Na, Ca, Mg, Fe and Zn) and main secondary metabolites (lutein and zeaxanthin) were examined after exposure to UV in a coiled tube UV-C reactor at doses known to achieve microbiologically stable egg fractions. The studied nutrients were fairly stable to a treatment with UVC light with the exception of retinal, vitamin C and carotenoids, which showed loses up to 80%, 66% and 61%, respectively. Moreover, the functional properties of ultraviolet-treated eggs were investigated. Results showed a positive impact on the foam ability and foam stability, and an increase on the emulsifying activity index above 20% versus pasteurized samples. Processing with UV can maintain most of the egg nutritive properties, and retain or even improve the technological properties of foaming and emulsification in eggs. Industrial relevance:: This novel UV-C system can be applied successfully to the Food Industry. UV-C does not impair nutritional damage to egg-treated products, and even improve egg functional properties. |
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Address |
[Mendes de Souza, Poliana; Fernandez, Avelina] Inst Agroquim & Tecnol Alimentos, CSIC, Dept Conservat & Qual, Paterna 46980, Spain, Email: poliana.souza@ict.ufvjm.edu.br |
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Publisher |
Elsevier Sci Ltd |
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English |
Summary Language |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1466-8564 |
ISBN |
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Conference |
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Notes |
WOS:000366764200019 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
2506 |
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Author |
Mendez, V.; Amoros, G.; Garcia, F.; Salt, J. |
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Title |
Emergent algorithms for replica location and selection in data grid |
Type |
Journal Article |
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Year |
2010 |
Publication |
Future Generation Computer Systems |
Abbreviated Journal |
Futur. Gener. Comp. Syst. |
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Volume |
26 |
Issue |
7 |
Pages |
934-946 |
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Keywords |
Grid computing; Algorithms; Optimization methods; Artificial intelligence |
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Abstract |
Grid infrastructures for e-Science projects are growing in magnitude terms. Improvements in data Grid replication algorithms may be critical in many of these infrastructures. This paper shows a decentralized replica optimization service, providing a general Emergent Artificial Intelligence (EAI) algorithm for the problem definition. Our aim is to set up a theoretical framework for emergent heuristics in Grid environments. Further, we describe two EAI approaches, the Particle Swarm Optimization PSO-Grid Multiswarm Federation and the Ant Colony Optimization ACO-Grid Asynchronous Colonies Optimization replica optimization algorithms, with some examples. We also present extended results with best performance and scalability features for PSO-Grid Multiswarrn Federation. |
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Address |
[Mendez Munoz, Victor; Amoros Vicente, Gabriel; Salt Cairols, Jose] CSIC, Grid & E Sci Grp, Inst Fis Corpuscular IFIC, Mixed Inst, E-46071 Valencia, Spain, Email: vmendez@ific.uv.es |
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Corporate Author |
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Publisher |
Elsevier Science Bv |
Place of Publication |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0167-739x |
ISBN |
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Area |
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Expedition |
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Conference |
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Notes |
ISI:000279804200004 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
no |
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Call Number |
IFIC @ elepoucu @ |
Serial |
411 |
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Author |
Barrientos, L.; Borja-Lloret, M.; Casaña, J.V.; Dendooven, P.; Garcia Lopez, J.G.; Hueso-Gonzalez, F.; Jiméeez-Ramos, M.C.; Perez-Curbelo, J.; Ros, A.; Roser, J.; Senra, C.; Viegas, R.; Llosa, G. |
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Title |
Gamma-ray sources imaging and test-beam results with MACACO III Compton camera |
Type |
Journal Article |
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Year |
2024 |
Publication |
Physica Medica |
Abbreviated Journal |
Phys. Medica |
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Volume |
117 |
Issue |
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Pages |
103199 - 10pp |
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Keywords |
Hadron therapy; Compton camera; Scintillator crystals; Silicon photomultipliers |
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Abstract |
Hadron therapy is a radiotherapy modality which offers a precise energy deposition to the tumors and a dose reduction to healthy tissue as compared to conventional methods. However, methods for real-time monitoring are required to ensure that the radiation dose is deposited on the target. The IRIS group of IFIC-Valencia developed a Compton camera prototype for this purpose, intending to image the Prompt Gammas emitted by the tissue during irradiation. The system detectors are composed of Lanthanum (III) bromide scintillator crystals coupled to silicon photomultipliers. After an initial characterization in the laboratory, in order to assess the system capabilities for future experiments in proton therapy centers, different tests were carried out in two facilities: PARTREC (Groningen, The Netherlands) and the CNA cyclotron (Sevilla, Spain). Characterization studies performed at PARTREC indicated that the detectors linearity was improved with respect to the previous version and an energy resolution of 5.2 % FWHM at 511 keV was achieved. Moreover, the imaging capabilities of the system were evaluated with a line source of 68Ge and a point-like source of 241Am-9Be. Images at 4.439 MeV were obtained from irradiation of a graphite target with an 18 MeV proton beam at CNA, to perform a study of the system potential to detect shifts at different intensities. In this sense, the system was able to distinguish 1 mm variations in the target position at different beam current intensities for measurement times of 1800 and 600 s. |
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Address |
[Barrientos, L.; Borja-Lloret, M.; Casana, J. V.; Hueso-Gonzalez, F.; Perez-Curbelo, J.; Ros, A.; Roser, J.; Senra, C.; Viegas, R.; Llosa, G.] CSIC UV, Inst Fis Corpuscular IFIC, Valencia, Spain, Email: Luis.Barrientos@ific.uv.es |
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Publisher |
Elsevier Sci Ltd |
Place of Publication |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1120-1797 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
WOS:001145147400001 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
5892 |
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Author |
Hernandez, P. |
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Title |
CP violation in the neutrino sector: The new frontier |
Type |
Journal Article |
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Year |
2012 |
Publication |
Comptes Rendus Physique |
Abbreviated Journal |
C. R. Phys. |
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Volume |
13 |
Issue |
2 |
Pages |
186-192 |
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Keywords |
Flavour physics; Neutrino physics; Matter-antimatter asymmetry |
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Abstract |
The discovery of neutrino masses has revealed a new flavour sector in the Standard Model. Just like the quark flavour sector, it contains a seed of CP violation, resulting in an asymmetric behaviour of matter and antimatter. It is argued that this new source of leptonic CP violation may be discovered in more precise neutrino oscillation experiments involving neutrino beams with energies in the GeV range that will be sent to distances of a few thousand kilometres. |
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Address |
[Hernandez, Pilar] Dpto Fis Teor UV, Valencia 46071, Spain, Email: m.pilar.hernandez@uv.es |
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Publisher |
Elsevier France-Editions Scientifiques Medicales Elsevier |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1631-0705 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
WOS:000301037700015 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
no |
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Call Number |
IFIC @ pastor @ |
Serial |
934 |
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Author |
Oliver, S.; Rodriguez Bosca, S.; Gimenez-Alventosa, V. |
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Title |
Enabling particle transport on CAD-based geometries for radiation simulations with penRed |
Type |
Journal Article |
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Year |
2024 |
Publication |
Computer Physics Communications |
Abbreviated Journal |
Comput. Phys. Commun. |
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Volume |
298 |
Issue |
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Pages |
109091 - 11pp |
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Keywords |
Radiation transport; PENELOPE physics; Monte Carlo simulation; PenRed; CAD; Triangular surface mesh |
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Abstract |
Geometry construction is a fundamental aspect of any radiation transport simulation, regardless of the Monte Carlo code being used. Typically, this process is tedious, time-consuming, and error-prone. The conventional approach involves defining geometries using mathematical objects or surfaces. However, this method comes with several limitations, especially when dealing with complex models, particularly those with organic shapes. Furthermore, since each code employs its own format and methodology for defining geometries, sharing and reproducing simulations among researchers becomes a challenging task. Consequently, many codes have implemented support for simulating over geometries constructed via Computer-Aided Design (CAD) tools. Unfortunately, this feature is lacking in penRed and other PENELOPE physics-based codes. Therefore, the objective of this work is to implement such support within the penRed framework. New version program summary Program Title: Parallel Engine for Radiation Energy Deposition (penRed) CPC Library link to program files: https://doi.org/10.17632/rkw6tvtngy.2 Developer's repository link: https://github.com/PenRed/PenRed Code Ocean capsule: https://codeocean.com/capsule/1041417/tree Licensing provisions: GNU Affero General Public License v3 Programming language: C++ standard 2011. Journal reference of previous version: V. Gimenez-Alventosa, V. Gimenez Gomez, S. Oliver, PenRed: An extensible and parallel Monte-Carlo framework for radiation transport based on PENELOPE, Computer Physics Communications 267 (2021) 108065. doi:https://doi.org/10.1016/j.cpc.2021.108065. Does the new version supersede the previous version?: Yes Reasons for the new version: Implements the capability to simulate on CAD constructed geometries, among many other features and fixes. Summary of revisions: All changes applied through the code versions are summarized in the file CHANGELOG.md in the repository package. Nature of problem: While Monte Carlo codes have proven valuable in simulating complex radiation scenarios, they rely heavily on accurate geometrical representations. In the same way as many other Monte Carlo codes, penRed employs simple geometric quadric surfaces like planes, spheres and cylinders to define geometries. However, since these geometric models offer a certain level of flexibility, these representations have limitations when it comes to simulating highly intricate and irregular shapes. Anatomic structures, for example, require detailed representations of organs, tissues and bones, which are difficult to achieve using basic geometric objects. Similarly, complex devices or intricate mechanical systems may have designs that cannot be accurately represented within the constraints of such geometric models. Moreover, when the complexity of the model increases, geometry construction process becomes more difficult, tedious, time-consuming and error-prone [2]. Also, as each Monte Carlo geometry library uses its own format and construction method, reproducing the same geometry among different codes is a challenging task. Solution method: To face the problems stated above, the objective of this work is to implement the capability to simulate using irregular and adaptable meshed geometries in the penRed framework. This kind of meshes can be constructed using Computer-Aided Design (CAD) tools, the use of which is very widespread and streamline the design process. This feature has been implemented in a new geometry module named “MESH_BODY” specific for this kind of geometries. This one is freely available and usable within the official penRed package1. It can be used since penRed version 1.9.3b and above. |
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[Oliver, S.] Univ Politecn Valencia, Inst Seguridad Ind Radiofis & Medioambiental ISIRY, Cami Vera S-N, Valencia 46022, Spain |
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Elsevier |
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English |
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0010-4655 |
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WOS:001172840800001 |
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no |
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yes |
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yes |
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IFIC @ pastor @ |
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6077 |
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