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KM3NeT Collaboration(Aiello, S. et al), Alves Garre, S., Calvo, D., Carretero, V., Garcia Soto, A., Gozzini, S. R., et al. (2024). Embedded software of the KM3NeT central logic board. Comput. Phys. Commun., 296, 109036–15pp.
Abstract: The KM3NeT Collaboration is building and operating two deep sea neutrino telescopes at the bottom of the Mediterranean Sea. The telescopes consist of latices of photomultiplier tubes housed in pressure-resistant glass spheres, called digital optical modules and arranged in vertical detection units. The two main scientific goals are the determination of the neutrino mass ordering and the discovery and observation of high-energy neutrino sources in the Universe. Neutrinos are detected via the Cherenkov light, which is induced by charged particles originated in neutrino interactions. The photomultiplier tubes convert the Cherenkov light into electrical signals that are acquired and timestamped by the acquisition electronics. Each optical module houses the acquisition electronics for collecting and timestamping the photomultiplier signals with one nanosecond accuracy. Once finished, the two telescopes will have installed more than six thousand optical acquisition nodes, completing one of the more complex networks in the world in terms of operation and synchronization. The embedded software running in the acquisition nodes has been designed to provide a framework that will operate with different hardware versions and functionalities. The hardware will not be accessible once in operation, which complicates the embedded software architecture. The embedded software provides a set of tools to facilitate remote manageability of the deployed hardware, including safe reconfiguration of the firmware. This paper presents the architecture and the techniques, methods and implementation of the embedded software running in the acquisition nodes of the KM3NeT neutrino telescopes. Program summary Program title: Embedded software for the KM3NeT CLB CPC Library link to program files: https://doi.org/10.17632/s847hpsns4.1 Licensing provisions: GNU General Public License 3 Programming language: C Nature of problem: The challenge for the embedded software in the KM3NeT neutrino telescope lies in orchestrating the Digital Optical Modules (DOMs) to achieve the synchronized data acquisition of the incoming optical signals. The DOMs are the crucial component responsible for capturing neutrino interactions deep underwater. The embedded software must configure and precisely time the operation of each DOM. Any deviation or timing mismatch could compromise data integrity, undermining the scientific value of the experiment. Therefore, the embedded software plays a critical role in coordinating, synchronizing, and operating these modules, ensuring they work in unison to capture and process neutrino signals accurately, ultimately advancing our understanding of fundamental particles in the Universe. Solution method: The embedded software on the DOMs provides a solution based on a C-based bare-metal application, operating without a real-time embedded OS. It is loaded into the RAM during FPGA configuration, consuming less than 256 kB of RAM. The software architecture comprises two layers: system software and application. The former offers OS-like features, including a multitasking scheduler, firmware updates, peripheral drivers, a UDP-based network stack, and error handling utilities. The application layer contains a state machine ensuring consistent program states. It is navigated via slow control events, including external inputs and autonomous responses. Subsystems within the application code control specific acquisition electronics components via the associated driver abstractions. Additional comments including restrictions and unusual features: Due to the operation conditions of the neutrino telescope, where access is restricted, the embedded software implements a fail-safe procedure to reconfigure the firmware where the embedded software runs.
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Martin Lozano, V., Sanda Seoane, R. M., & Zurita, J. (2023). Z'-explorer 2.0: Reconnoitering the dark matter landscape. Comput. Phys. Commun., 288, 108729–14pp.
Abstract: We introduce version 2.0 of Z'-explorer, a software tool that provides a simple, fast, and user-friendly test of models with an extra U (1) gauge boson (Z') against experimental LHC results. The main novelty of the second version is the inclusion of missing energy searches, as the first version only included final states into SM particles. Hence Z'-explorer 2.0 is able to test dark matter models where the Z' acts as an s-channel mediator between the Standard Model and the dark sector, a widespread benchmark employed by the ATLAS and CMS experimental collaborations. To this end, we perform here the first public reinterpretation of the most recent ATLAS mono-jet search with 139 fb-1. In addition, the corresponding searches in the visible final states have also been updated. We illustrate the power of our code by re -obtaining public plots and also showing novel results. In particular, we study the cases where the Z' couples strongly to top quarks (top-philic), where dark matter couples with a mixture of vector and axial-vector couplings, and also perform a scan in the parameter space of a string inspired Stuckelberg model. Z'-explorer 2.0 is publicly available on GitHub. Program summary Program Title: Z'-explorer 2.0 CPC Library link to program files: https://doi .org /10 .17632 /k7tdp8kwgf .2 Developer's repository link: https://github .com /ro -sanda /Z--explorer-2 .0 Licensing provisions: GPLv3 Programming language: C++ and bash Nature of problem: New SM neutral gauge bosons, Z', are ubiquitously present in models of New Physics. In order to confront these models versus a large and ever-growing library of LHC searches, Z'-explorer 1.0 had already included all final states including Standard Model particles. Notably, the previous version of this tool lacked the so-called invisible final states manifested as a momentum imbalance in the transverse plane (“missing energy”). These searches help to probe mediators into a dark sector, where a dark matter candidate resides. Solution method: Z'-explorer encodes the production cross sections for Z' bosons at the LHC as a function of their mass, allowing for a fast evaluation of the exclusion limits. This version of Z'-explorer includes a careful validation of the latest search with one energetic jet (mono-jet) performed by the ATLAS collaboration. Hence one can now test if a given point in parameter space is excluded by both visible and invisible searches. The modular structure of the code has been kept, which allows for potential additions (low-energy constraints, flavor, extrapolation to future colliders).
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Gariazzo, S., de Salas, P. F., Pisanti, O., & Consiglio, R. (2022). PArthENoPE revolutions. Comput. Phys. Commun., 271, 108205–13pp.
Abstract: This paper presents the main features of a new and updated version of the program PArthENoPE, which the community has been using for many years for computing the abundances of light elements produced during Big Bang Nucleosynthesis. This is the third release of the PArthENoPE code, after the 2008 and the 2018 ones, and will be distributed from the code's website, http://parthenope.na.infn.it. Apart from minor changes, the main improvements in this new version include a revisited implementation of the nuclear rates for the most important reactions of deuterium destruction, H-2(p,gamma) He-3, H-2(d, n)He-3 and H-2(d, p)H-3, and a re-designed GUI, which extends the functionality of the previous one. The new GUI, in particular, supersedes the previous tools for running over grids of parameters with a better management of parallel runs, and it offers a brand-new set of functions for plotting the results. Program summary Program title: PArthENoPE 3.0 CPC Library link to program files: https://doi.org/10.17632/wygr7d8yt9.2 Developer's repository link: http://parthenope.na.infn.it Licensing provisions: GPLv3 Programming language: Fortran 77 and Python Nature of problem: Computation of yields of light elements synthesized in the primordial universe Solution method: Livermore Solver for Ordinary Differential Equations (LSODE) for stiff and nonstiff systems, Python GUI for running and plotting Journal reference of previous version: Comput. Phys. Commun. 233 (2018) 237-242 Does the new version supersede the previous version?: Yes Reasons for the new version: Update of the physics and improvements in the GUI Summary of revisions: Update of the physics implemented in the Fortran code and improvements in the GUI functionalities, in particular new plotting functions.
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Figueroa, D. G., Florio, A., Torrenti, F., & Valkenburg, W. (2023). CosmoLattice: A modern code for lattice simulations of scalar and gauge field dynamics in an expanding universe. Comput. Phys. Commun., 283, 108586–13pp.
Abstract: This paper describes CosmoGattice, a modern package for lattice simulations of the dynamics of interacting scalar and gauge fields in an expanding universe. CosmoGattice incorporates a series of features that makes it very versatile and powerful: i) it is written in C++ fully exploiting the object oriented programming paradigm, with a modular structure and a clear separation between the physics and the technical details, ii) it is MPI-based and uses a discrete Fourier transform parallelized in multiple spatial dimensions, which makes it specially appropriate for probing scenarios with well -separated scales, running very high resolution simulations, or simply very long ones, iii) it introduces its own symbolic language, defining field variables and operations over them, so that one can introduce differential equations and operators in a manner as close as possible to the continuum, iv) it includes a library of numerical algorithms, ranging from O(delta t(2)) to O(delta t(10)) methods, suitable for simulating global and gauge theories in an expanding grid, including the case of 'self-consistent' expansion sourced by the fields themselves. Relevant observables are provided for each algorithm (e.g. energy densities, field spectra, lattice snapshots) and we note that, remarkably, all our algorithms for gauge theories (Abelian or non-Abelian) always respect the Gauss constraint to machine precision. Program summary Program Title:: CosmoGattice CPC Library link to program files: https://doi .org /10 .17632 /44vr5xssc6 .1 Developer's repository link: http://github .com /cosmolattice /cosmolattice Licensing provisions: MIT Programming language: C++, MPI Nature of problem: The phenomenology of high energy physics in the early universe is typically characterized by non-linear dynamics, which cannot be captured accurately with analytical techniques. In order to fully understand the non-linearities developed in a given scenario, one needs to carry out lattice simulations. A number of public packages for lattice simulations have appeared over the years, but most of them are only capable of simulating scalar fields. However, realistic models of particle physics do contain other kind of field species, such as (Abelian or non-Abelian) gauge fields, whose non-linear dynamics can also play a relevant role in the early universe. Tensor modes representing gravitational waves are also naturally expected in many scenarios. Solution method: CosmoGattice represents a modern code for lattice simulations of scalar-gauge field theories in an expanding universe. It allows for the simulation of the evolution of interacting (singlet) scalar fields, charged scalar fields under U(1) and/or SU(2) gauge groups, and the corresponding associated Abelian and/or non-Abelian gauge fields. From version 1.1 onward, CosmoGattice also allows to simulate the production of gravitational waves. Simulations can be done either in a flat space-time background, or in a homogeneous and isotropic (spatially flat) expanding FLRW background. CosmoGattice provides symplectic integrators, with accuracy ranging from O (delta t(2)) up to O(delta t(10)), to simuate the non-linear dynamics of the appropriate fields in comoving three-dimensional lattices. The code is parallelized with MPI, and uses a discrete Fourier Transform parallelized in multiple spatial dimensions, which makes it a very powerful code for probing physical problems with well-separated scales. Moreover, the code has been designed as a `platform' to implement any system of dynamical equations suitable for discretization on a lattice.
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Aiola, S., Amhis, Y., Billoir, P., Jashal, B. K., Henry, L., Oyanguren, A., et al. (2021). Hybrid seeding: A standalone track reconstruction algorithm for scintillating fibre tracker at LHCb. Comput. Phys. Commun., 260, 107713–5pp.
Abstract: We describe the Hybrid seeding, a stand-alone pattern recognition algorithm aiming at finding charged particle trajectories for the LHCb upgrade. A significant improvement to the charged particle reconstruction efficiency is accomplished by exploiting the knowledge of the LHCb magnetic field and the position of energy deposits in the scintillating fibre tracker detector. Moreover, we achieve a low fake rate and a small contribution to the overall timing budget of the LHCb real-time data processing.
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KM3NeT Collaboration(Aiello, S. et al), Alves Garre, S., Calvo, D., Carretero, V., Colomer, M., Corredoira, I., et al. (2020). gSeaGen: The KM3NeT GENIE-based code for neutrino telescopes. Comput. Phys. Commun., 256, 107477–15pp.
Abstract: The gSeaGen code is a GENIE-based application developed to efficiently generate high statistics samples of events, induced by neutrino interactions, detectable in a neutrino telescope. The gSeaGen code is able to generate events induced by all neutrino flavours, considering topological differences between tracktype and shower-like events. Neutrino interactions are simulated taking into account the density and the composition of the media surrounding the detector. The main features of gSeaGen are presented together with some examples of its application within the KM3NeT project. Program summary Program Title: gSeaGen CPC Library link to program files: http://dx.doi.org/10.17632/ymgxvy2br4.1 Licensing provisions: GPLv3 Programming language: C++ External routines/libraries: GENIE [1] and its external dependencies. Linkable to MUSIC [2] and PROPOSAL [3]. Nature of problem: Development of a code to generate detectable events in neutrino telescopes, using modern and maintained neutrino interaction simulation libraries which include the state-of-the-art physics models. The default application is the simulation of neutrino interactions within KM3NeT [4]. Solution method: Neutrino interactions are simulated using GENIE, a modern framework for Monte Carlo event generators. The GENIE framework, used by nearly all modern neutrino experiments, is considered as a reference code within the neutrino community. Additional comments including restrictions and unusual features: The code was tested with GENIE version 2.12.10 and it is linkable with release series 3. Presently valid up to 5 TeV. This limitation is not intrinsic to the code but due to the present GENIE valid energy range. References: [1] C. Andreopoulos at al., Nucl. Instrum. Meth. A614 (2010) 87. [2] P. Antonioli et al., Astropart. Phys. 7 (1997) 357. [3] J. H. Koehne et al., Comput. Phys. Commun. 184 (2013) 2070. [4] S. Adrian-Martinez et al., J. Phys. G: Nucl. Part. Phys. 43 (2016) 084001.
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KM3NeT Collaboration(Aiello, S. et al), Calvo, D., Coleiro, A., Colomer, M., Gozzini, S. R., Hernandez-Rey, J. J., et al. (2020). The Control Unit of the KM3NeT Data Acquisition System. Comput. Phys. Commun., 256, 107433–16pp.
Abstract: The KM3NeT Collaboration runs a multi-site neutrino observatory in the Mediterranean Sea. Water Cherenkov particle detectors, deep in the sea and far off the coasts of France and Italy, are already taking data while incremental construction progresses. Data Acquisition Control software is operating off-shore detectors as well as testing and qualification stations for their components. The software, named Control Unit, is highly modular. It can undergo upgrades and reconfiguration with the acquisition running. Interplay with the central database of the Collaboration is obtained in a way that allows for data taking even if Internet links fail. In order to simplify the management of computing resources in the long term, and to cope with possible hardware failures of one or more computers, the KM3NeT Control Unit software features a custom dynamic resource provisioning and failover technology, which is especially important for ensuring continuity in case of rare transient events in multi-messenger astronomy. The software architecture relies on ubiquitous tools and broadly adopted technologies and has been successfully tested on several operating systems.
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Aebischer, J., Brivio, I., Celis, A., Evans, J. A., Jiang, Y., Kumar, J., et al. (2018). WCxf : An exchange format for Wilson coefficients beyond the Standard Model. Comput. Phys. Commun., 232, 71–83.
Abstract: We define a data exchange format for numerical values of Wilson coefficients of local operators parameterising low-energy effects of physics beyond the Standard Model. The format facilitates interfacing model-specific Wilson coefficient calculators, renormalisation group (RG) runners, and observable calculators. It is designed to be unambiguous (defining a non-redundant set of operators with fixed normalisation in each basis), extensible (allowing the addition of new EFTs or bases by the user), and robust (being based on industry standard file formats with parsers implemented in many programming languages). We have implemented the format for the Standard Model EFT (SMEFT) and for the weak effective theory (WET) below the electroweak scale and have added interfaces to a number of public codes dealing with SMEFT or WET. We also provide command-line utilities and a Python module for convenient manipulation of WCxf files, including translation between different bases and matching from SMEFT to WET. (C) 2018 Elsevier B.V. All rights reserved.
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Consiglio, R., de Salas, P. F., Mangano, G., Miele, G., Pastor, S., & Pisanti, O. (2018). PArthENoPE reloaded. Comput. Phys. Commun., 233, 237–242.
Abstract: We describe the main features of a new and updated version of the program PArthENoPE, which computes the abundances of light elements produced during Big Bang Nucleosynthesis. As the previous first release in 2008, the new one, PArthENoPE2.0, is publicly available and distributed from the code site, http://parthenope.na.infn.it . Apart from minor changes, which will be also detailed, the main improvements are as follows. The powerful, but not freely accessible, NAG routines have been substituted by ODEPACK libraries, without any significant loss in precision. Moreover, we have developed a Graphical User Interface (GUI) which allows a friendly use of the code and a simpler implementation of running for grids of input parameters. New Version program summary Program Title: PArthENoPE2.0 Program Files doi : http://dx.doi.org/10.17632/wvgr7d8yt9.1 Licensing provisions: GPLv3 Programming language: Fortran 77 and Python Supplementary material: User Manual available on the web page http://parthenope.na.infn.it Journal reference of previous version: Comput. Phys. Commun. 178 (2008) 956 971 Does the new version supersede the previous version?: Yes Reasons for the new version: Make the code more versatile and user friendly Summary of revisions: (1) Publicly available libraries (2) GUI for configuration Nature of problem: Computation of yields of light elements synthesized in the primordial universe Solution method: Livermore Solver for Ordinary Differential Equations (LSODE) for stiff and nonstiff systems
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Allanach, B. C., Martin, S. P., Robertson, D. G., & Ruiz de Austri, R. (2017). The inclusion of two-loop SUSYQCD corrections to gluino and squark pole masses in the minimal and next-to-minimal supersymmetric standard model: SOFTSUSY3.7. Comput. Phys. Commun., 219, 339–345.
Abstract: We describe an extension of the SOFTSUSY spectrum calculator to include two-loop supersymmetric QCD (SUSYQCD) corrections of order O(alpha(2)(s)) to gluino and squark pole masses, either in the minimal supersymmetric standard model (MSSM) or the next-to-minimal supersymmetric standard model (NMSSM). This document provides an overview of the program and acts as a manual for the new version of SOFTSUSY, which includes the increase in accuracy in squark and gluino pole mass predictions. Program summary Program title: SOFTSUSY Program Files doi: http://dx.doLorg/10.17632/sh77x9j7hs.1 Licensing provisions: GNU GPLv3 Programming language: C++, fortran, C Nature of problem: Calculating supersymmetric particle spectrum, mixing parameters and couplings in the MSSM or the NMSSM. The solution to the renormalization group equations must be consistent with theoretical boundary conditions on supersymmetry breaking parameters, as well as a weak-scale boundary condition on gauge couplings, Yukawa couplings and the Higgs potential parameters. Solution method: Nested fixed point iteration. Restrictions: SOFTSUSY will provide a solution only in the perturbative regime and it assumes that all couplings of the model are real (i.e. CP-conserving). If the parameter point under investigation is nonphysical for some reason (for example because the electroWeak potential does not have an acceptable minimum), SOFTSUSY returns an error message. The higher order corrections included are for the MSSM (R-parity conserving or violating) or the real R-parity conserving NMSSM only. Journal reference of previous version: Comput. Phys. Comm. 189 (2015) 192. Does the new version supersede the previous version?: Yes. Reasons for the new version: It is desirable to improve the accuracy of the squark and gluinos mass predictions, since they strongly affect supersymmetric particle production cross-sections at colliders. Summary of revisions: The calculation of the squark and gluino pole masses is extended to be of next-to next-to leading order in SUSYQCD, i.e. including terms up to O(g(s)(4)/(16 pi(2))(2)). Additional comments: Program obtainable from http://softsusy.hepforge.org/
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