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Author Albiol, A.; Corbi, A.; Albiol, F.
Title (up) Automatic intensity windowing of mammographic images based on a perceptual metric Type Journal Article
Year 2017 Publication Medical Physics Abbreviated Journal Med. Phys.
Volume 44 Issue 4 Pages 1369-1378
Keywords contrast stretching; Gabor filtering; human visual system; mammogram; mutual information; window level/width
Abstract Purpose: Initial auto-adjustment of the window level WL and width WW applied to mammographic images. The proposed intensity windowing (IW) method is based on the maximization of the mutual information (MI) between a perceptual decomposition of the original 12-bit sources and their screen displayed 8-bit version. Besides zoom, color inversion and panning operations, IW is the most commonly performed task in daily screening and has a direct impact on diagnosis and the time involved in the process. Methods: The authors present a human visual system and perception-based algorithm named GRAIL (Gabor-relying adjustment of image levels). GRAIL initially measures a mammogram's quality based on the MI between the original instance and its Gabor-filtered derivations. From this point on, the algorithm performs an automatic intensity windowing process that outputs the WL/WW that best displays each mammogram for screening. GRAIL starts with the default, high contrast, wide dynamic range 12-bit data, and then maximizes the graphical information presented in ordinary 8-bit displays. Tests have been carried out with several mammogram databases. They comprise correlations and an ANOVA analysis with the manual IW levels established by a group of radiologists. A complete MATLAB implementation of GRAIL is available at . Results: Auto-leveled images show superior quality both perceptually and objectively compared to their full intensity range and compared to the application of other common methods like global contrast stretching (GCS). The correlations between the human determined intensity values and the ones estimated by our method surpass that of GCS. The ANOVA analysis with the upper intensity thresholds also reveals a similar outcome. GRAIL has also proven to specially perform better with images that contain micro-calcifications and/or foreign X-ray-opaque elements and with healthy BI-RADS A-type mammograms. It can also speed up the initial screening time by a mean of 4.5 s per image. Conclusions: A novel methodology is introduced that enables a quality-driven balancing of the WL/WW of mammographic images. This correction seeks the representation that maximizes the amount of graphical information contained in each image. The presented technique can contribute to the diagnosis and the overall efficiency of the breast screening session by suggesting, at the beginning, an optimal and customized windowing setting for each mammogram.
Address [Albiol, Alberto] Univ Politecn Valencia, iTeam Res Inst, Valencia, Spain, Email: alberto.corbi@ific.uv.es
Corporate Author Thesis
Publisher Wiley Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0094-2405 ISBN Medium
Area Expedition Conference
Notes WOS:000400572700016 Approved no
Is ISI yes International Collaboration no
Call Number IFIC @ pastor @ Serial 3122
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Author Stoppa, F.; Bhattacharyya, S.; Ruiz de Austri, R.; Vreeswijk, P.; Caron, S.; Zaharijas, G.; Bloemen, S.; Principe, G.; Malyshev, D.; Vodeb, V.; Groot, P.J.; Cator, E.; Nelemans, G.
Title (up) AutoSourceID-Classifier Star-galaxy classification using a convolutional neural network with spatial information Type Journal Article
Year 2023 Publication Astronomy & Astrophysics Abbreviated Journal Astron. Astrophys.
Volume 680 Issue Pages A109 - 16pp
Keywords methods: data analysis; techniques: image processing; astronomical databases: miscellaneous; stars: imaging; Galaxies: statistics
Abstract Aims. Traditional star-galaxy classification techniques often rely on feature estimation from catalogs, a process susceptible to introducing inaccuracies, thereby potentially jeopardizing the classification's reliability. Certain galaxies, especially those not manifesting as extended sources, can be misclassified when their shape parameters and flux solely drive the inference. We aim to create a robust and accurate classification network for identifying stars and galaxies directly from astronomical images.Methods. The AutoSourceID-Classifier (ASID-C) algorithm developed for this work uses 32x32 pixel single filter band source cutouts generated by the previously developed AutoSourceID-Light (ASID-L) code. By leveraging convolutional neural networks (CNN) and additional information about the source position within the full-field image, ASID-C aims to accurately classify all stars and galaxies within a survey. Subsequently, we employed a modified Platt scaling calibration for the output of the CNN, ensuring that the derived probabilities were effectively calibrated, delivering precise and reliable results.Results. We show that ASID-C, trained on MeerLICHT telescope images and using the Dark Energy Camera Legacy Survey (DECaLS) morphological classification, is a robust classifier and outperforms similar codes such as SourceExtractor. To facilitate a rigorous comparison, we also trained an eXtreme Gradient Boosting (XGBoost) model on tabular features extracted by SourceExtractor. While this XGBoost model approaches ASID-C in performance metrics, it does not offer the computational efficiency and reduced error propagation inherent in ASID-C's direct image-based classification approach. ASID-C excels in low signal-to-noise ratio and crowded scenarios, potentially aiding in transient host identification and advancing deep-sky astronomy.
Address [Stoppa, F.; Vreeswijk, P.; Bloemen, S.; Groot, P. J.; Nelemans, G.] Radboud Univ Nijmegen, Dept Astrophys IMAPP, POB 9010, NL-6500 GL Nijmegen, Netherlands, Email: f.stoppa@astro.ru.nl
Corporate Author Thesis
Publisher Edp Sciences S A Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0004-6361 ISBN Medium
Area Expedition Conference
Notes WOS:001131898100001 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 5888
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Author Stoppa, F.; Ruiz de Austri, R.; Vreeswijk, P.; Bhattacharyya, S.; Caron, S.; Bloemen, S.; Zaharijas, G.; Principe, G.; Vodeb, V.; Groot, P.J.; Cator, E.; Nelemans, G.
Title (up) AutoSourceID-FeatureExtractor Optical image analysis using a two-step mean variance estimation network for feature estimation and uncertainty characterisation Type Journal Article
Year 2023 Publication Astronomy & Astrophysics Abbreviated Journal Astron. Astrophys.
Volume 680 Issue Pages A108 - 14pp
Keywords astronomical databases: miscellaneous; methods: data analysis; stars: imaging; techniques: image processing
Abstract Aims. In astronomy, machine learning has been successful in various tasks such as source localisation, classification, anomaly detection, and segmentation. However, feature regression remains an area with room for improvement. We aim to design a network that can accurately estimate sources' features and their uncertainties from single-band image cutouts, given the approximated locations of the sources provided by the previously developed code AutoSourceID-Light (ASID-L) or other external catalogues. This work serves as a proof of concept, showing the potential of machine learning in estimating astronomical features when trained on meticulously crafted synthetic images and subsequently applied to real astronomical data.Methods. The algorithm presented here, AutoSourceID-FeatureExtractor (ASID-FE), uses single-band cutouts of 32x32 pixels around the localised sources to estimate flux, sub-pixel centre coordinates, and their uncertainties. ASID-FE employs a two-step mean variance estimation (TS-MVE) approach to first estimate the features and then their uncertainties without the need for additional information, for example the point spread function (PSF). For this proof of concept, we generated a synthetic dataset comprising only point sources directly derived from real images, ensuring a controlled yet authentic testing environment.Results. We show that ASID-FE, trained on synthetic images derived from the MeerLICHT telescope, can predict more accurate features with respect to similar codes such as SourceExtractor and that the two-step method can estimate well-calibrated uncertainties that are better behaved compared to similar methods that use deep ensembles of simple MVE networks. Finally, we evaluate the model on real images from the MeerLICHT telescope and the Zwicky Transient Facility (ZTF) to test its transfer learning abilities.
Address [Stoppa, F.; Vreeswijk, P.; Bloemen, S.; Groot, P. J.; Nelemans, G.] Radboud Univ Nijmegen, Dept Astrophys, IMAPP, POB 9010, NL-6500 GL Nijmegen, Netherlands, Email: f.stoppa@astro.ru.nl
Corporate Author Thesis
Publisher Edp Sciences S A Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0004-6361 ISBN Medium
Area Expedition Conference
Notes WOS:001131898100003 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 5887
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Author Stoppa, F.; Vreeswijk, P.; Bloemen, S.; Bhattacharyya, S.; Caron, S.; Johannesson, G.; Ruiz de Austri, R.; van den Oetelaar, C.; Zaharijas, G.; Groot, P.J.; Cator, E.; Nelemans, G.
Title (up) AutoSourceID-Light Fast optical source localization via U-Net and Laplacian of Gaussian Type Journal Article
Year 2022 Publication Astronomy & Astrophysics Abbreviated Journal Astron. Astrophys.
Volume 662 Issue Pages A109 - 8pp
Keywords astronomical databases; miscellaneous; methods; data analysis; stars; imaging; techniques; image processing
Abstract Aims. With the ever-increasing survey speed of optical wide-field telescopes and the importance of discovering transients when they are still young, rapid and reliable source localization is paramount. We present AutoSourceID-Light (ASID-L), an innovative framework that uses computer vision techniques that can naturally deal with large amounts of data and rapidly localize sources in optical images. Methods. We show that the ASID-L algorithm based on U-shaped networks and enhanced with a Laplacian of Gaussian filter provides outstanding performance in the localization of sources. A U-Net network discerns the sources in the images from many different artifacts and passes the result to a Laplacian of Gaussian filter that then estimates the exact location. Results. Using ASID-L on the optical images of the MeerLICHT telescope demonstrates the great speed and localization power of the method. We compare the results with SExtractor and show that our method outperforms this more widely used method. ASID-L rapidly detects more sources not only in low- and mid-density fields, but particularly in areas with more than 150 sources per square arcminute. The training set and code used in this paper are publicly available.
Address [Stoppa, F.; Vreeswijk, P.; Bloemen, S.; Groot, P. J.; Nelemans, G.] Radboud Univ Nijmegen, Dept Astrophys, IMAPP, POB 9010, NL-6500 GL Nijmegen, Netherlands, Email: f.stoppa@astro.ru.nl
Corporate Author Thesis
Publisher Edp Sciences S A Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0004-6361 ISBN Medium
Area Expedition Conference
Notes WOS:000818665600009 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 5291
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Author Heavy Flavor Averaging Group (Amhis, Y. et al); Oyanguren, A.
Title (up) Averages of b-hadron, c-hadron, and tau-lepton properties as of summer 2016 Type Journal Article
Year 2017 Publication European Physical Journal C Abbreviated Journal Eur. Phys. J. C
Volume 77 Issue 12 Pages 895 - 335pp
Keywords
Abstract This article reports world averages of measurements of b-hadron, c-hadron, and tau-lepton properties obtained by the Heavy Flavor Averaging Group using results available through summer 2016. For the averaging, common input parameters used in the various analyses are adjusted (rescaled) to common values, and known correlations are taken into account. The averages include branching fractions, lifetimes, neutral meson mixing parameters, CP violation parameters, parameters of semileptonic decays, and Cabbibo-Kobayashi-Maskawa matrix elements.
Address [Amhis, Y.] Univ Paris 11, LAL, CNRS, IN2P3, Orsay, France, Email: yasmine.sara.amhis@cern.ch;
Corporate Author Thesis
Publisher Springer Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1434-6044 ISBN Medium
Area Expedition Conference
Notes WOS:000418591100001 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 3446
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Author Heavy Flavor Averaging Group (Amhis, Y. et al); Oyanguren, A.
Title (up) Averages of b-hadron, c-handron, and t-lepton properties as of 2021 Type Journal Article
Year 2023 Publication Physical Review D Abbreviated Journal Phys. Rev. D
Volume 107 Issue 5 Pages 052008 - 365pp
Keywords
Abstract This paper reports world averages of measurements of b-hadron, c-hadron, and τ-lepton properties obtained by the Heavy Flavor Averaging Group using results available before April 2021. In rare cases, significant results obtained several months later are also used. For the averaging, common input parameters used in the various analyses are adjusted (rescaled) to common values, and known correlations are taken into account. The averages include branching fractions, lifetimes, neutral meson mixing parameters, CP violation parameters, parameters of semileptonic decays, and Cabibbo-Kobayashi-Maskawa matrix elements.
Address [Amhis, Y.] Univ Paris Saclay, CNRS, IN2P3, IJCLab, Orsay, France
Corporate Author Thesis
Publisher Amer Physical Soc Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 2470-0010 ISBN Medium
Area Expedition Conference
Notes WOS:000981903600002 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 5651
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Author Bolle, E.; Casella, C.; Chesi, E.; De Leo, R.; Dissertori, G.; Fanti, V.; Gillam, J.E.; Heller, M.; Joram, C.; Lustermann, W.; Nappi, E.; Oliver, J.F.; Pauss, F.; Rafecas, M.; Rudge, A.; Ruotsalainen, U.; Schinzel, D.; Schneider, T.; Seguinot, J.; Solevi, P.; Stapnes, S.; Tuna, U.; Weilhammer, P.
Title (up) AX-PET: A novel PET concept with G-APD readout Type Journal Article
Year 2012 Publication Nuclear Instruments & Methods in Physics Research A Abbreviated Journal Nucl. Instrum. Methods Phys. Res. A
Volume 695 Issue Pages 129-134
Keywords PET; Axial geometry; Geiger-mode Avalanche Photo Diodes (G-APD); SiPM
Abstract The AX-PET collaboration has developed a novel concept for high resolution PET imaging to overcome some of the performance limitations of classical PET cameras, in particular the compromise between spatial resolution and sensitivity introduced by the parallax error. The detector consists of an arrangement of long LYSO scintillating crystals axially oriented around the field of view together with arrays of wave length shifter strips orthogonal to the crystals. This matrix allows a precise 3D measurement of the photon interaction point. This is valid both for photoelectric absorption at 511 key and for Compton scattering down to deposited energies of about 100 keV. Crystals and WLS strips are individually read out using Geiger-mode Avalanche Photo Diodes (G-APDs). The sensitivity of such a detector can be adjusted by changing the number of layers and the resolution is defined by the crystal and strip dimensions. Two AX-PET modules were built and fully characterized in dedicated test set-ups at CERN, with point-like Na-22 sources. Their performance in terms of energy (Renew approximate to 11.8% (FWMH) at 511 key) and spatial resolution was assessed (sigma(axial) approximate to 0.65 mm), both individually and for the two modules in coincidence. Test campaigns at ETH Zurich and at the company AAA allowed the tomographic reconstructions of more complex phantoms validating the 3D reconstruction algorithms. The concept of the AX-PET modules will be presented together with some characterization results. We describe a count rate model which allows to optimize the planing of the tomographic scans.
Address [Heller, M.; Joram, C.; Schneider, T.; Seguinot, J.] CERN, PH Dept, CH-1211 Geneva, Switzerland, Email: Matthieu.Heller@cern.ch
Corporate Author Thesis
Publisher Elsevier Science Bv Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0168-9002 ISBN Medium
Area Expedition Conference
Notes WOS:000311469900026 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 1236
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Author Di Valentino, E.; Giusarma, E.; Lattanzi, M.; Melchiorri, A.; Mena, O.
Title (up) Axion cold dark matter: Status after Planck and BICEP2 Type Journal Article
Year 2014 Publication Physical Review D Abbreviated Journal Phys. Rev. D
Volume 90 Issue 4 Pages 043534 - 11pp
Keywords
Abstract We investigate the axion dark matter scenario (ADM), in which axions account for all of the dark matter in the Universe, in light of the most recent cosmological data. In particular, we use the Planck temperature data, complemented by WMAP E-polarization measurements, as well as the recent BICEP2 observations of B-modes. Baryon acoustic oscillation data, including those from the baryon oscillation spectroscopic survey, are also considered in the numerical analyses. We find that, in the minimal ADM scenario and for Delta(QCD) = 200 MeV, the full data set implies that the axion mass m(a) = 82.2 +/- 1.1 μeV [corresponding to the Peccei-Quinn symmetry being broken at a scale f(a) = (7.54 +/- 0.10) x 10(10) GeV], or m(a) = 76.6 +/- 2.6 μeV [f(a) = (8.08 +/- 0.27) x 10(10) GeV] when we allow for a nonstandard effective number of relativistic species N-eff. We also find a 2 sigma preference for N-eff > 3.046. The limit on the sum of neutrino masses is Sigma m(v) < 0.25 eV at 95% C.L. for N-eff = 3.046, or Sigma m(v) < 0.47 eV when N-eff is a free parameter. Considering extended scenarios where either the dark energy equation-of-state parameter w, the tensor spectral index n(t), or the running of the scalar index dn(s)/d ln k is allowed to vary does not change significantly the axion mass-energy density constraints. However, in the case of the full data set exploited here, there is a preference for a nonzero tensor index or scalar running, driven by the different tensor amplitudes implied by the Planck and BICEP2 observations. We also study the effect on our estimates of theoretical uncertainties, in particular the imprecise knowledge of the QCD scale Delta(QCD), in the calculation of the temperature-dependent axion mass. We find that in the simplest ADM scenario the Planck + WP data set implies that the axion mass m(a) = 63.7 +/- 1.2 μeV for Delta(QCD) = 400 MeV. We also comment on the possibility that axions do not make up for all the dark matter, or that the contribution of string-produced axions has been grossly underestimated; in that case, the values that we find for the mass can conservatively be considered as lower limits. Dark matter axions with mass in the 60-80 μeV (corresponding to an axion-photon coupling G(a gamma gamma) similar to 10(-14) GeV-1) range can, in principle, be detected by looking for axion-to-photon conversion occurring inside a tunable microwave cavity permeated by a high-intensity magnetic field, and operating at a frequency nu similar or equal to 15-20 GHz. This is out of the reach of current experiments like the axion dark matter experiment (limited to a maximum frequency of a few GHzs), but is, on the other hand, within the reach of the upcoming axion dark matter experiment-high frequency experiment that will explore the 4-40 GHz frequency range and then be sensitive to axion masses up to similar to 160 μeV.
Address [Di Valentino, Eleonora; Giusarma, Elena; Melchiorri, Alessandro] Univ Roma La Sapienza, Dept Phys, I-00185 Rome, Italy
Corporate Author Thesis
Publisher Amer Physical Soc Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1550-7998 ISBN Medium
Area Expedition Conference
Notes WOS:000340890100001 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 1893
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Author Fileviez Perez, P.; Murgui, C.; Plascencia, A.D.
Title (up) Axion dark matter, proton decay and unification Type Journal Article
Year 2020 Publication Journal of High Energy Physics Abbreviated Journal J. High Energy Phys.
Volume 01 Issue 1 Pages 091 - 18pp
Keywords Beyond Standard Model; Cosmology of Theories beyond the SM; GUT
Abstract We discuss the possibility to predict the QCD axion mass in the context of grand unified theories. We investigate the implementation of the DFSZ mechanism in the context of renormalizable SU(5) theories. In the simplest theory, the axion mass can be predicted with good precision in the range m(a) = (2-16) neV, and there is a strong correlation between the predictions for the axion mass and proton decay rates. In this context, we predict an upper bound for the proton decay channels with antineutrinos, tau(p -> K+(nu) over bar) less than or similar to 4 x 10(37) yr and tau(p -> pi(+)(nu) over bar) less than or similar to 2 x 10(36) yr. This theory can be considered as the minimal realistic grand unified theory with the DFSZ mechanism and it can be fully tested by proton decay and axion experiments.
Address [Fileviez Perez, Pavel; Plascencia, Alexis D.] Case Western Reserve Univ, Phys Dept, Cleveland, OH 44106 USA, Email: pxf112@case.edu;
Corporate Author Thesis
Publisher Springer Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1029-8479 ISBN Medium
Area Expedition Conference
Notes WOS:000588065200001 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 4605
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Author O'Hare, C.A.J.; Caputo, A.; Millar, A.J.; Vitagliano, E.
Title (up) Axion helioscopes as solar magnetometers Type Journal Article
Year 2020 Publication Physical Review D Abbreviated Journal Phys. Rev. D
Volume 102 Issue 4 Pages 043019 - 19pp
Keywords
Abstract Axion helioscopes search for solar axions and axionlike particles via inverse Primakoff conversion in strong laboratory magnets pointed at the Sun. Anticipating the detection of solar axions, we determine the potential for the planned next-generation helioscope, the International Axion Observatory (IAXO), to measure or constrain the solar magnetic field. To do this we consider a previously neglected component of the solar axion flux at sub-keV energies arising from the conversion of longitudinal plasmons. This flux is sensitively dependent to the magnetic field profile of the Sun, with lower energies corresponding to axions converting into photons at larger solar radii. If the detector technology eventually installed in IAXO has an energy resolution better than 200 eV, then solar axions could become an even more powerful messenger than neutrinos of the magnetic field in the core of the Sun. For energy resolutions better than 10 eV, IAXO could access the inner 70% of the Sun and begin to constrain the field at the tachocline: the boundary between the radiative and convective zones. The longitudinal plasmon flux from a toroidal magnetic field also has an additional 2% geometric modulation effect which could be used to measure the angular dependence of the magnetic field.
Address [O'Hare, Ciaran A. J.] Univ Sydney, Sch Phys, Phys Rd, Sydney, NSW 2006, Australia, Email: ciaran.ohare@sydney.edu.au;
Corporate Author Thesis
Publisher Amer Physical Soc Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1550-7998 ISBN Medium
Area Expedition Conference
Notes WOS:000562631300001 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 4513
Permanent link to this record