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Author |
SCiMMA and SNEWS Collaborations (Baxter, A.L. et al); Colomer, M. |
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Title  |
Collaborative experience between scientific software projects using Agile Scrum development |
Type |
Journal Article |
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Year |
2022 |
Publication |
Software-Practice & Experience |
Abbreviated Journal |
Softw.-Pract. Exp. |
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Volume |
52 |
Issue |
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Pages |
2077-2096 |
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Keywords |
Agile; cyberinfrastructure; multimessenger astrophysics; scientific computing; software development |
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Abstract |
Developing sustainable software for the scientific community requires expertise in software engineering and domain science. This can be challenging due to the unique needs of scientific software, the insufficient resources for software engineering practices in the scientific community, and the complexity of developing for evolving scientific contexts. While open-source software can partially address these concerns, it can introduce complicating dependencies and delay development. These issues can be reduced if scientists and software developers collaborate. We present a case study wherein scientists from the SuperNova Early Warning System collaborated with software developers from the Scalable Cyberinfrastructure for Multi-Messenger Astrophysics project. The collaboration addressed the difficulties of open-source software development, but presented additional risks to each team. For the scientists, there was a concern of relying on external systems and lacking control in the development process. For the developers, there was a risk in supporting a user-group while maintaining core development. These issues were mitigated by creating a second Agile Scrum framework in parallel with the developers' ongoing Agile Scrum process. This Agile collaboration promoted communication, ensured that the scientists had an active role in development, and allowed the developers to evaluate and implement the scientists' software requirements. The collaboration provided benefits for each group: the scientists actuated their development by using an existing platform, and the developers utilized the scientists' use-case to improve their systems. This case study suggests that scientists and software developers can avoid scientific computing issues by collaborating and that Agile Scrum methods can address emergent concerns. |
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Address |
[Baxter, Amanda L.; Clark, Michael; Kopec, Abigail; Lang, Rafael F.; Li, Shengchao; Linvill, Mark W.; Milisavljevic, Danny; Weil, Kathryn E.] Purdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USA, Email: adepoian@purdue.edu; |
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Publisher |
Wiley |
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English |
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ISSN |
0038-0644 |
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Notes |
WOS:000830363800001 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
5305 |
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Author |
Pakarinen, J. et al; Algora, A. |
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Title |
Collectivity in Pb-196, Pb-198 isotopes probed in Coulomb-excitation experiments at REX-ISOLDE |
Type |
Journal Article |
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Year |
2017 |
Publication |
Journal of Physics G |
Abbreviated Journal |
J. Phys. G |
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Volume |
44 |
Issue |
6 |
Pages |
064009 - 10pp |
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Keywords |
Coulomb excitation; radioactive ion beams; gamma-ray spectroscopy; gamma transitions and level energies |
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Abstract |
The neutron-deficient Pb-196,Pb-198 isotopes have been studied in Coulomb-excitation experiments employing the Miniball gamma-ray spectrometer and radioactive ion beams from the REX-ISOLDE post-accelerator at CERN. The reduced transition probabilities of the first excited 2(+) states in Pb-196 and Pb-198 nuclei have been measured for the first time. Values of B (E2) = 18.2(-4.1)(+4.8) W. u. and B (E2) = 13.1(-3.5)(+4.9) W. u., were obtained, respectively. The experiment sheds light on the development of collectivity when moving from the regime governed by the generalised seniority scheme to a region, where intruding structures, associated with different deformed shapes, start to come down in energy and approach the spherical ground state. |
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Address |
[Pakarinen, J.; Grahn, T.; Herzan, A.; Jakobsson, U.; Konki, J.; Peura, P.; Rahkila, P.] Univ Jyvaskyla, Dept Phys, POB 35, FI-40014 Jyvaskyla, Finland, Email: janne.pakarinen@jyu.fi |
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Publisher |
Iop Publishing Ltd |
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English |
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ISSN |
0954-3899 |
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Conference |
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Notes |
WOS:000400875800003 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
3126 |
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Author |
Gimenez-Alventosa, V.; Antunes, P.C.G.; Vijande, J.; Ballester, F.; Perez-Calatayud, J.; Andreo, P. |
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Title |
Collision-kerma conversion between dose-to-tissue and dose-to-water by photon energy-fluence corrections in low-energy brachytherapy |
Type |
Journal Article |
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Year |
2017 |
Publication |
Physics in Medicine and Biology |
Abbreviated Journal |
Phys. Med. Biol. |
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Volume |
62 |
Issue |
1 |
Pages |
146-164 |
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Keywords |
Monte Carlo; dosimetry; low-energy seed; collision-kerma; mass energy-absorption coefficients; energy-fluence correction factor |
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Abstract |
The AAPM TG-43 brachytherapy dosimetry formalism, introduced in 1995, has become a standard for brachytherapy dosimetry worldwide; it implicitly assumes that charged-particle equilibrium (CPE) exists for the determination of absorbed dose to water at different locations, except in the vicinity of the source capsule. Subsequent dosimetry developments, based on Monte Carlo calculations or analytical solutions of transport equations, do not rely on the CPE assumption and determine directly the dose to different tissues. At the time of relating dose to tissue and dose to water, or vice versa, it is usually assumed that the photon fluence in water and in tissues are practically identical, so that the absorbed dose in the two media can be related by their ratio of mass energy-absorption coefficients. In this work, an efficient way to correlate absorbed dose to water and absorbed dose to tissue in brachytherapy calculations at clinically relevant distances for low-energy photon emitting seeds is proposed. A correction is introduced that is based on the ratio of the water-to-tissue photon energy-fluences. State-of-the art Monte Carlo calculations are used to score photon fluence differential in energy in water and in various human tissues (muscle, adipose and bone), which in all cases include a realistic modelling of low-energy brachytherapy sources in order to benchmark the formalism proposed. The energy-fluence based corrections given in this work are able to correlate absorbed dose to tissue and absorbed dose to water with an accuracy better than 0.5% in the most critical cases (e.g. bone tissue). |
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Address |
[Gimenez-Alventosa, Vicent; Antunes, Paula C. G.; Vijande, Javier; Ballester, Facundo] Univ Valencia, Dept Atom Mol & Nucl Phys, E-46100 Burjassot, Spain, Email: vijande@uv.es |
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Publisher |
Iop Publishing Ltd |
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English |
Summary Language |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0031-9155 |
ISBN |
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Area |
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Expedition |
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Conference |
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Notes |
WOS:000391567700001 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
2923 |
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Author |
Lloret, E.; Picouet, P.A.; Trbojevich, R.; Fernandez, A. |
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Title |
Colour stability of cooked ham packed under modified atmospheres in polyamide nanocomposite blends |
Type |
Journal Article |
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Year |
2016 |
Publication |
Lwt-Food Science And Technology |
Abbreviated Journal |
LWT-Food Sci. Technol. |
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Volume |
66 |
Issue |
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Pages |
582-589 |
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Keywords |
Nylon; Cooked ham; Nanoclays; Oxygen permeation; Colour; Exfoliation; MAP |
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Abstract |
Two novel blends containing a low-density polyethylene (LDPE) and a neat polyamide (PA) or a polyamide nanocomposite (PAN) layers were fabricated and their technological potential was evaluated during the refrigeration of cooked ham in modified atmospheres (MAP). Nanoclays were homogeneously distributed and nearly exfoliated, and they lowered significantly the oxygen transmission rate (OTR) of the PAN films. Due to the lower OTR, the headspace oxygen level in PAN pouches do not rise above 0.26% but it approached 2% in PA pouches at day 20. The residual oxygen levels were key for colour change during MAP storage of cooked ham. Cooked ham redness and reflectivity were stable during 27 days in PAN pouches while a strong colour deterioration took place after day 7 in PA pouches. Other parameters such as moisture content and water activity remained unaltered, and pH development was related to microbial growth and independent of the packaging polymer. The evolution of cooked ham colour in PAN was comparable to a high-barrier commercial polymer, and was acceptable for commercial sale for 27 days, showing excellent perspectives for polyamide nanocomposites in the storage of cooked ham. |
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Address |
[Lloret, Elsa; Picouet, Pierre A.] IRTA, Dept Tecnol Dels Aliments, Monells, Girona, Spain, Email: velifdez@ific.uv.es |
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Publisher |
Elsevier Science Bv |
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English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0023-6438 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
WOS:000367413200079 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
2510 |
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Author |
de Gouvea, A.; De Romeri, V.; Ternes, C.A. |
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Title |
Combined analysis of neutrino decoherence at reactor experiments |
Type |
Journal Article |
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Year |
2021 |
Publication |
Journal of High Energy Physics |
Abbreviated Journal |
J. High Energy Phys. |
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Volume |
06 |
Issue |
6 |
Pages |
042 - 12pp |
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Keywords |
Neutrino Physics; Beyond Standard Model |
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Abstract |
Reactor experiments are well suited to probe the possible loss of coherence of neutrino oscillations due to wave-packets separation. We combine data from the short-baseline experiments Daya Bay and the Reactor Experiment for Neutrino Oscillation (RENO) and from the long baseline reactor experiment KamLAND to obtain the best current limit on the reactor antineutrino wave-packet width, sigma > 2.1 x 10(-4) nm at 90% CL. We also find that the determination of standard oscillation parameters is robust, i.e., it is mostly insensitive to the presence of hypothetical decoherence effects once one combines the results of the different reactor neutrino experiments. |
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Address |
[de Gouvea, Andre] Northwestern Univ, Dept Phys & Astron, 2145 Sheridan Rd, Evanston, IL 60208 USA, Email: degouvea@northwestern.edu; |
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Thesis |
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Publisher |
Springer |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1029-8479 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
WOS:000762304800001 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
5150 |
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Author |
KM3NeT Collaboration (Aiello, S. et al); Alves Garre, S.; Calvo, D.; Carretero, V.; Colomer, M.; Garcia Soto, A.; Gozzini, S.R.; Hernandez-Rey, J.J.; Khan Chowdhury, N.R.; Lazo, A.; Manczak, J.; Palacios Gonzalez, J.; Pieterse, C.; Real, D.; Salesa Greus, F.; Sanchez Losa, A.; Zornoza, J.D.; Zuñiga, J. |
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Title |
Combined sensitivity of JUNO and KM3NeT/ORCA to the neutrino mass ordering |
Type |
Journal Article |
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Year |
2022 |
Publication |
Journal of High Energy Physics |
Abbreviated Journal |
J. High Energy Phys. |
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Volume |
03 |
Issue |
3 |
Pages |
055 - 31pp |
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Keywords |
Neutrino Detectors and Telescopes (experiments); Oscillation |
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Abstract |
This article presents the potential of a combined analysis of the JUNO and KM3NeT/ORCA experiments to determine the neutrino mass ordering. This combination is particularly interesting as it significantly boosts the potential of either detector, beyond simply adding their neutrino mass ordering sensitivities, by removing a degeneracy in the determination of Delta M-31(2) between the two experiments when assuming the wrong ordering. The study is based on the latest projected performances for JUNO, and on simulation tools using a full Monte Carlo approach to the KM3NeT/ORCA response with a careful assessment of its energy systematics. From this analysis, a 5 sigma determination of the neutrino mass ordering is expected after 6 years of joint data taking for any value of the oscillation parameters. This sensitivity would be achieved after only 2 years of joint data taking assuming the current global best-fit values for those parameters for normal ordering. |
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Address |
[Aiello, S.; Bruno, R.; Leonora, E.; Longhitano, F.; Randazzo, N.] Ist Nazl Fis Nucl, Sez Catania, Via Santa Sofia 64, I-95123 Italy, Italy, Email: nchau@apc.in2p3.fr; |
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Thesis |
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Publisher |
Springer |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1029-8479 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
WOS:000767221800005 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
5181 |
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Author |
van Beekveld, M.; Caron, S.; Hendriks, L.; Jackson, P.; Leinweber, A.; Otten, S.; Patrick, R.; Ruiz de Austri, R.; Santoni, M.; White, M. |
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Title |
Combining outlier analysis algorithms to identify new physics at the LHC |
Type |
Journal Article |
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Year |
2021 |
Publication |
Journal of High Energy Physics |
Abbreviated Journal |
J. High Energy Phys. |
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Volume |
09 |
Issue |
9 |
Pages |
024 - 33pp |
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Keywords |
Phenomenological Models; Supersymmetry Phenomenology |
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Abstract |
The lack of evidence for new physics at the Large Hadron Collider so far has prompted the development of model-independent search techniques. In this study, we compare the anomaly scores of a variety of anomaly detection techniques: an isolation forest, a Gaussian mixture model, a static autoencoder, and a beta-variational autoencoder (VAE), where we define the reconstruction loss of the latter as a weighted combination of regression and classification terms. We apply these algorithms to the 4-vectors of simulated LHC data, but also investigate the performance when the non-VAE algorithms are applied to the latent space variables created by the VAE. In addition, we assess the performance when the anomaly scores of these algorithms are combined in various ways. Using supersymmetric benchmark points, we find that the logical AND combination of the anomaly scores yielded from algorithms trained in the latent space of the VAE is the most effective discriminator of all methods tested. |
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Address |
[van Beekveld, Melissa] Clarendon Lab, Rudolf Peierls Ctr Theoret Phys, 20 Pks Rd, Oxford OX1 3PU, England, Email: mcbeekveld@gmail.com; |
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Corporate Author |
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Thesis |
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Publisher |
Springer |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1029-8479 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
WOS:000695421600003 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
4973 |
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Author |
Autieri, A.; Cieri, L.; Ferrera, G.; Sborlini, G.F.R. |
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Title |
Combining QED and QCD transverse-momentum resummation for W and Z boson production at hadron colliders |
Type |
Journal Article |
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Year |
2023 |
Publication |
Journal of High Energy Physics |
Abbreviated Journal |
J. High Energy Phys. |
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Volume |
07 |
Issue |
7 |
Pages |
104 - 30pp |
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Keywords |
Electroweak Precision Physics; Precision QED; Resummation |
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Abstract |
In this article, we consider the transverse momentum (qT) distribution of W and Z bosons produced in hadronic collisions. We combine the qT resummation for QED and QCD radiation including the QED soft emissions from the W boson in the final state. In particular, we perform the resummation of enhanced logarithmic contributions due to soft and collinear emissions at next-to-leading accuracy in QED, leading-order accuracy for mixed QED-QCD and next-to-next-to-leading accuracy in QCD. In the small-qT region we consistently include in our results the next-to-next-to-leading order (i.e. two loops) QCD corrections and the next-to-leading order (i.e. one loop) electroweak corrections. The matching with the fixed-order calculation at large qT has been performed at next-to-leading order in QCD (i.e. at O(alpha(2)(S))) and at leading order in QED. We show numerical results for W and Z production at the Tevatron and the LHC. Finally, we consider the effect of combined QCD and QED resummation for the ratio of W and Z qT distributions, and we study the impact of the QED corrections providing an estimate of the corresponding perturbative uncertainties. |
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Address |
[Autieri, Andrea; Cieri, Leandro] Univ Valencia, Consejo Super Invest Cient, Inst Fis Corpuscular, Parc Cientif, E-46980 Valencia, Spain, Email: andrea.autieri@ific.uv.es; |
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Corporate Author |
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Thesis |
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Publisher |
Springer |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1029-8479 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
WOS:001030009700004 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
5596 |
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Author |
BRIKEN Collaboration (Tolosa-Delgado, A. et al); Agramunt, J.; Tain, J.L.; Algora, A.; Domingo-Pardo, C.; Morales, A.I.; Rubio, B. |
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Title |
Commissioning of the BRIKEN detector for the measurement of very exotic beta-delayed neutron emitters |
Type |
Journal Article |
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Year |
2019 |
Publication |
Nuclear Instruments & Methods in Physics Research A |
Abbreviated Journal |
Nucl. Instrum. Methods Phys. Res. A |
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Volume |
925 |
Issue |
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Pages |
133-147 |
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Keywords |
Beta-delayed neutrons; Neutron and beta counters; Analysis methodology; Background correction |
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Abstract |
A new detection system has been installed at the RIKEN Nishina Center (Japan) to investigate decay properties of very neutron-rich nuclei. The setup consists of three main parts: a moderated neutron counter, a detection system sensitive to the implantation and decay of radioactive ions, and gamma-ray detectors. We describe here the setup, the commissioning experiment and some selected results demonstrating its performance for the measurement of half-lives and beta-delayed neutron emission probabilities. The methodology followed in the analysis of the data is described in detail. Particular emphasis is placed on the correction of the accidental neutron background. |
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Address |
[Tolosa-Delgado, A.; Agramunt, J.; Tain, J. L.; Algora, A.; Domingo-Pardo, C.; Morales, A., I; Rubio, B.] CSIC, Inst Fis Corpuscular, E-46980 Paterna, Spain, Email: tain@ific.uv.es |
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Corporate Author |
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Thesis |
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Publisher |
Elsevier Science Bv |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0168-9002 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
WOS:000460539400018 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
3939 |
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Author |
Trbojevich, R.A.; Fernandez, A.; Watanabe, F.; Mustafa, T.; Bryant, M.S. |
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Title |
Comparative study of silver nanoparticle permeation using Side-Bi-Side and Franz diffusion cells |
Type |
Journal Article |
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Year |
2016 |
Publication |
Journal of Nanoparticle Research |
Abbreviated Journal |
J. Nanopart. Res. |
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Volume |
18 |
Issue |
3 |
Pages |
55 - 12pp |
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Keywords |
Membranes; Silver nanoparticles; Diffusion cells; Food packaging; Permeation; Environmental and health effects |
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Abstract |
Better understanding the mechanisms of nanoparticle permeation through membranes and packaging polymers has important implications for the evaluation of drug transdermal uptake, in food safety and the environmental implications of nanotechnology. In this study, permeation of 21 nm diameter silver nanoparticles (AgNPs) was tested using Side-Bi-Side and Franz static diffusion cells through hydrophilic 0.1 and 0.05 lm pore diameter 125 μm thick synthetic cellulose membranes, and 16 and 120 μm thick low-density polyethylene (LDPE) films. Experiments performed with LDPE films discarded permeation of AgNPs or Ag ions over the investigated time-frame in both diffusion systems. But controlled release of AgNPs has been quantified using semipermeable hydrophilic membranes. The permeation followed a quasi-linear time-dependent model during the experimental time-frame, which represents surface reaction-limited permeation. Diffusive flux, diffusion coefficients, and membrane permeability were determined as a function of pore size and diffusion model. Concentration gradient and pore size were key to understand mass transfer phenomena in the diffusion systems. |
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Address |
[Trbojevich, Raul A.; Bryant, Matthew S.] US FDA, Div Biochem Toxicol, Natl Ctr Toxicol Res, 3900 NCTR Rd, Jefferson, AR 72079 USA, Email: velifdez@ific.uv.es |
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Corporate Author |
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Thesis |
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Publisher |
Springer |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1388-0764 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
WOS:000387044400002 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
2849 |
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