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Author |
SCiMMA and SNEWS Collaborations (Baxter, A.L. et al); Colomer, M. |
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Title |
Collaborative experience between scientific software projects using Agile Scrum development |
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Journal Article |
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Year |
2022 |
Publication |
Software-Practice & Experience |
Abbreviated Journal |
Softw.-Pract. Exp. |
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Volume |
52 |
Issue |
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Pages |
2077-2096 |
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Keywords |
Agile; cyberinfrastructure; multimessenger astrophysics; scientific computing; software development |
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Abstract |
Developing sustainable software for the scientific community requires expertise in software engineering and domain science. This can be challenging due to the unique needs of scientific software, the insufficient resources for software engineering practices in the scientific community, and the complexity of developing for evolving scientific contexts. While open-source software can partially address these concerns, it can introduce complicating dependencies and delay development. These issues can be reduced if scientists and software developers collaborate. We present a case study wherein scientists from the SuperNova Early Warning System collaborated with software developers from the Scalable Cyberinfrastructure for Multi-Messenger Astrophysics project. The collaboration addressed the difficulties of open-source software development, but presented additional risks to each team. For the scientists, there was a concern of relying on external systems and lacking control in the development process. For the developers, there was a risk in supporting a user-group while maintaining core development. These issues were mitigated by creating a second Agile Scrum framework in parallel with the developers' ongoing Agile Scrum process. This Agile collaboration promoted communication, ensured that the scientists had an active role in development, and allowed the developers to evaluate and implement the scientists' software requirements. The collaboration provided benefits for each group: the scientists actuated their development by using an existing platform, and the developers utilized the scientists' use-case to improve their systems. This case study suggests that scientists and software developers can avoid scientific computing issues by collaborating and that Agile Scrum methods can address emergent concerns. |
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Address |
[Baxter, Amanda L.; Clark, Michael; Kopec, Abigail; Lang, Rafael F.; Li, Shengchao; Linvill, Mark W.; Milisavljevic, Danny; Weil, Kathryn E.] Purdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USA, Email: adepoian@purdue.edu; |
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Wiley |
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English |
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ISSN |
0038-0644 |
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Notes |
WOS:000830363800001 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
5305 |
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Author |
Assam, I.; Vijande, J.; Ballester, F.; Perez-Calatayud, J.; Poppe, B.; Siebert, F.A. |
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Title |
Evaluation of dosimetric effects of metallic artifact reduction and tissue assignment on Monte Carlo dose calculations for I-125 prostate implants |
Type |
Journal Article |
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Year |
2022 |
Publication |
Medical Physics |
Abbreviated Journal |
Med. Phys. |
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Volume |
49 |
Issue |
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Pages |
6195-6208 |
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Keywords |
metallic artifact reduction; Monte Carlo dosimetry; post-implant CT; prostate brachytherapy; tissue assignment schemes; voxelized virtual patient model |
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Abstract |
Purpose Monte Carlo (MC) simulation studies, aimed at evaluating the magnitude of tissue heterogeneity in I-125 prostate permanent seed implant brachytherapy (BT), customarily use clinical post-implant CT images to generate a virtual representation of a realistic patient model (virtual patient model). Metallic artifact reduction (MAR) techniques and tissue assignment schemes (TAS) are implemented on the post-implant CT images to mollify metallic artifacts due to BT seeds and to assign tissue types to the voxels corresponding to the bright seed spots and streaking artifacts, respectively. The objective of this study is to assess the combined influence of MAR and TAS on MC absorbed dose calculations in post-implant CT-based phantoms. The virtual patient models used for I-125 prostate implant MC absorbed dose calculations in this study are derived from the CT images of an external radiotherapy prostate patient without BT seeds and prostatic calcifications, thus averting the need to implement MAR and TAS. Methods The geometry of the IsoSeed I25.S17plus source is validated by comparing the MC calculated results of the TG-43 parameters for the line source approximation with the TG-43U1S2 consensus data. Four MC absorbed dose calculations are performed in two virtual patient models using the egs_brachy MC code: (1) TG-43-based D-w,w-TG(43), (2) D-w,D-w-MBDC that accounts for interseed scattering and attenuation (ISA), (3) D-m,D-m that examines ISA and tissue heterogeneity by scoring absorbed dose in tissue, and (4) D-w,D-m that unlike D-m,D-m scores absorbed dose in water. The MC absorbed doses (1) and (2) are simulated in a TG-43 patient phantom derived by assigning the densities of every voxel to 1.00 g cm(-3) (water), whereas MC absorbed doses (3) and (4) are scored in the TG-186 patient phantom generated by mapping the mass density of each voxel to tissue according to a CT calibration curve. The MC absorbed doses calculated in this study are compared with VariSeed v8.0 calculated absorbed doses. To evaluate the dosimetric effect of MAR and TAS, the MC absorbed doses of this work (independent of MAR and TAS) are compared to the MC absorbed doses of different I-125 source models from previous studies that were calculated with different MC codes using post-implant CT-based phantoms generated by implementing MAR and TAS on post-implant CT images. Results The very good agreement of TG-43 parameters of this study and the published consensus data within 3% validates the geometry of the IsoSeed I25.S17plus source. For the clinical studies, the TG-43-based calculations show a D-90 overestimation of more than 4% compared to the more realistic MC methods due to ISA and tissue composition. The results of this work generally show few discrepancies with the post-implant CT-based dosimetry studies with respect to the D-90 absorbed dose metric parameter. These discrepancies are mainly Type B uncertainties due to the different I-125 source models and MC codes. Conclusions The implementation of MAR and TAS on post-implant CT images have no dosimetric effect on the I-125 prostate MC absorbed dose calculation in post-implant CT-based phantoms. |
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Address |
[Assam, Isong; Siebert, Frank-Andre] UKSH, Clin Radiotherapy Radiooncol, Campus Kiel, Kiel, Germany, Email: Isong.Assam@uksh.de |
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Wiley |
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English |
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ISSN |
0094-2405 |
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Notes |
WOS:000835807200001 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
5321 |
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Author |
Biagi, N.; Francesconi, S.; Gessner, M.; Bellini, M.; Zavatta, A. |
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Title |
Remote Phase Sensing by Coherent Single Photon Addition |
Type |
Journal Article |
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Year |
2022 |
Publication |
Advanced Quantum Technologies |
Abbreviated Journal |
Adv. Quantum Technol. |
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Volume |
5 |
Issue |
12 |
Pages |
2200039 - 9pp |
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Keywords |
quantum optics; quantum state engineering; remote quantum sensing |
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Abstract |
A remote phase sensing scheme is proposed, inspired by the high sensitivity of the entanglement produced by coherent multimode photon addition on the phase set in the remote heralding apparatus. By exploring the case of delocalized photon addition over two modes containing identical coherent states, the optimal observable to perform remote phase estimation from heralded quadrature measurements is derived. The technique is experimentally tested with calibration measurements and then used for estimating a remote phase with a sensitivity that is found to scale with the intensity of the local coherent states, which never interacted with the sample. |
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Address |
[Biagi, Nicola; Francesconi, Saverio; Bellini, Marco; Zavatta, Alessandro] Ist Nazl Ott CNR INO, Lgo E Fermi 6, I-50125 Florence, Italy, Email: marco.bellini@ino.cnr.it; |
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Wiley |
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English |
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Notes |
WOS:000865838800001 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
5378 |
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Author |
de Azcarraga, J.A. |
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Title |
The new Spanish educational legislation: why public education will not improve |
Type |
Journal Article |
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Year |
2022 |
Publication |
Revista Española de Pedagogía |
Abbreviated Journal |
Rev. Esp. Pedagog. |
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Volume |
80 |
Issue |
281 |
Pages |
111-129 |
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Keywords |
Forthcoming Spanish educational legislation; primary school; secondary education; universities |
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Abstract |
This paper provides some reasons that explain, in the view of the author, why the present eagerness of the Spanish Educational Authorities to reform all levels of education, from primary school to the universities, will not improve the quality of the Spanish educational system. |
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Address |
[Adolfo de Azcarraga, Jose] Univ Valencia, Fis Teor, Valencia, Spain, Email: j.a.de.azcarraga@ific.uv.es |
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Univ Int Rioja-Unir |
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Spanish |
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ISSN |
0034-9461 |
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Notes |
WOS:000752024500007 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
no |
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Call Number |
IFIC @ pastor @ |
Serial |
5125 |
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Author |
Folgado, M.G.; Sanz, V. |
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Title |
Exploring the political pulse of a country using data science tools |
Type |
Journal Article |
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Year |
2022 |
Publication |
Journal of Computational Social Science |
Abbreviated Journal |
J. Comput. Soc. Sci. |
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Volume |
5 |
Issue |
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Pages |
987-1000 |
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Keywords |
Politics; Spain; Sentiment analysis; Artificial Intelligence; Machine learning; Neural networks; Natural Language Processing (NLP) |
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Abstract |
In this paper we illustrate the use of Data Science techniques to analyse complex human communication. In particular, we consider tweets from leaders of political parties as a dynamical proxy to political programmes and ideas. We also study the temporal evolution of their contents as a reaction to specific events. We analyse levels of positive and negative sentiment in the tweets using new tools adapted to social media. We also train a Fully-Connected Neural Network (FCNN) to recognise the political affiliation of a tweet. The FCNN is able to predict the origin of the tweet with a precision in the range of 71-75%, and the political leaning (left or right) with a precision of around 90%. This study is meant to be viewed as an example of how to use Twitter data and different types of Data Science tools for a political analysis. |
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Address |
[Folgado, Miguel G.; Sanz, Veronica] Univ Valencia, Inst Fis Corpuscular IFIC, CSIC, Valencia 46980, Spain, Email: migarfol@upvnet.upv.es; |
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Springernature |
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English |
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ISSN |
2432-2717 |
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Notes |
WOS:000742263500002 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
5077 |
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