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Author |
Hirn, J.; Garcia, J.E.; Montesinos-Navarro, A.; Sanchez-Martin, R.; Sanz, V.; Verdu, M. |
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Title |
A deep Generative Artificial Intelligence system to predict species coexistence patterns |
Type |
Journal Article |
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Year |
2022 |
Publication |
Methods in Ecology and Evolution |
Abbreviated Journal |
Methods Ecol. Evol. |
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Volume |
13 |
Issue |
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Pages |
1052-1061 |
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Keywords |
artificial intelligence; direct interactions; generative adversarial networks; indirect interactions; species coexistence; variational AutoEncoders |
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Abstract |
Predicting coexistence patterns is a current challenge to understand diversity maintenance, especially in rich communities where these patterns' complexity is magnified through indirect interactions that prevent their approximation with classical experimental approaches. We explore cutting-edge Machine Learning techniques called Generative Artificial Intelligence (GenAI) to predict species coexistence patterns in vegetation patches, training generative adversarial networks (GAN) and variational AutoEncoders (VAE) that are then used to unravel some of the mechanisms behind community assemblage. The GAN accurately reproduces real patches' species composition and plant species' affinity to different soil types, and the VAE also reaches a high level of accuracy, above 99%. Using the artificially generated patches, we found that high-order interactions tend to suppress the positive effects of low-order interactions. Finally, by reconstructing successional trajectories, we could identify the pioneer species with larger potential to generate a high diversity of distinct patches in terms of species composition. Understanding the complexity of species coexistence patterns in diverse ecological communities requires new approaches beyond heuristic rules. Generative Artificial Intelligence can be a powerful tool to this end as it allows to overcome the inherent dimensionality of this challenge. |
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Address |
[Hirn, Johannes; Enrique Garcia, Jose; Sanz, Veronica] Univ Valencia, CSIC, Inst Fis Corpuscular IFIC, Valencia, Spain, Email: miguel.verdu@ext.uv.es |
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Publisher |
Wiley |
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Language |
English |
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ISSN |
2041-210x |
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Conference |
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Notes |
WOS:000765239700001 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
5155 |
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Permanent link to this record |
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Author |
Assam, I.; Vijande, J.; Ballester, F.; Perez-Calatayud, J.; Poppe, B.; Siebert, F.A. |
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Title |
Evaluation of dosimetric effects of metallic artifact reduction and tissue assignment on Monte Carlo dose calculations for I-125 prostate implants |
Type |
Journal Article |
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Year |
2022 |
Publication |
Medical Physics |
Abbreviated Journal |
Med. Phys. |
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Volume |
49 |
Issue |
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Pages |
6195-6208 |
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Keywords |
metallic artifact reduction; Monte Carlo dosimetry; post-implant CT; prostate brachytherapy; tissue assignment schemes; voxelized virtual patient model |
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Abstract |
Purpose Monte Carlo (MC) simulation studies, aimed at evaluating the magnitude of tissue heterogeneity in I-125 prostate permanent seed implant brachytherapy (BT), customarily use clinical post-implant CT images to generate a virtual representation of a realistic patient model (virtual patient model). Metallic artifact reduction (MAR) techniques and tissue assignment schemes (TAS) are implemented on the post-implant CT images to mollify metallic artifacts due to BT seeds and to assign tissue types to the voxels corresponding to the bright seed spots and streaking artifacts, respectively. The objective of this study is to assess the combined influence of MAR and TAS on MC absorbed dose calculations in post-implant CT-based phantoms. The virtual patient models used for I-125 prostate implant MC absorbed dose calculations in this study are derived from the CT images of an external radiotherapy prostate patient without BT seeds and prostatic calcifications, thus averting the need to implement MAR and TAS. Methods The geometry of the IsoSeed I25.S17plus source is validated by comparing the MC calculated results of the TG-43 parameters for the line source approximation with the TG-43U1S2 consensus data. Four MC absorbed dose calculations are performed in two virtual patient models using the egs_brachy MC code: (1) TG-43-based D-w,w-TG(43), (2) D-w,D-w-MBDC that accounts for interseed scattering and attenuation (ISA), (3) D-m,D-m that examines ISA and tissue heterogeneity by scoring absorbed dose in tissue, and (4) D-w,D-m that unlike D-m,D-m scores absorbed dose in water. The MC absorbed doses (1) and (2) are simulated in a TG-43 patient phantom derived by assigning the densities of every voxel to 1.00 g cm(-3) (water), whereas MC absorbed doses (3) and (4) are scored in the TG-186 patient phantom generated by mapping the mass density of each voxel to tissue according to a CT calibration curve. The MC absorbed doses calculated in this study are compared with VariSeed v8.0 calculated absorbed doses. To evaluate the dosimetric effect of MAR and TAS, the MC absorbed doses of this work (independent of MAR and TAS) are compared to the MC absorbed doses of different I-125 source models from previous studies that were calculated with different MC codes using post-implant CT-based phantoms generated by implementing MAR and TAS on post-implant CT images. Results The very good agreement of TG-43 parameters of this study and the published consensus data within 3% validates the geometry of the IsoSeed I25.S17plus source. For the clinical studies, the TG-43-based calculations show a D-90 overestimation of more than 4% compared to the more realistic MC methods due to ISA and tissue composition. The results of this work generally show few discrepancies with the post-implant CT-based dosimetry studies with respect to the D-90 absorbed dose metric parameter. These discrepancies are mainly Type B uncertainties due to the different I-125 source models and MC codes. Conclusions The implementation of MAR and TAS on post-implant CT images have no dosimetric effect on the I-125 prostate MC absorbed dose calculation in post-implant CT-based phantoms. |
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Address |
[Assam, Isong; Siebert, Frank-Andre] UKSH, Clin Radiotherapy Radiooncol, Campus Kiel, Kiel, Germany, Email: Isong.Assam@uksh.de |
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Publisher |
Wiley |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Edition |
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ISSN |
0094-2405 |
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Conference |
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Notes |
WOS:000835807200001 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
5321 |
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Permanent link to this record |
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Author |
Folgado, M.G.; Sanz, V. |
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Title |
Exploring the political pulse of a country using data science tools |
Type |
Journal Article |
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Year |
2022 |
Publication |
Journal of Computational Social Science |
Abbreviated Journal |
J. Comput. Soc. Sci. |
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Volume |
5 |
Issue |
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Pages |
987-1000 |
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Keywords |
Politics; Spain; Sentiment analysis; Artificial Intelligence; Machine learning; Neural networks; Natural Language Processing (NLP) |
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Abstract |
In this paper we illustrate the use of Data Science techniques to analyse complex human communication. In particular, we consider tweets from leaders of political parties as a dynamical proxy to political programmes and ideas. We also study the temporal evolution of their contents as a reaction to specific events. We analyse levels of positive and negative sentiment in the tweets using new tools adapted to social media. We also train a Fully-Connected Neural Network (FCNN) to recognise the political affiliation of a tweet. The FCNN is able to predict the origin of the tweet with a precision in the range of 71-75%, and the political leaning (left or right) with a precision of around 90%. This study is meant to be viewed as an example of how to use Twitter data and different types of Data Science tools for a political analysis. |
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Address |
[Folgado, Miguel G.; Sanz, Veronica] Univ Valencia, Inst Fis Corpuscular IFIC, CSIC, Valencia 46980, Spain, Email: migarfol@upvnet.upv.es; |
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Publisher |
Springernature |
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Language |
English |
Summary Language |
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Edition |
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ISSN |
2432-2717 |
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Conference |
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Notes |
WOS:000742263500002 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
5077 |
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Permanent link to this record |
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Author |
Panotopoulos, G. |
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Title |
A dynamical dark energy model with a given luminosity distance |
Type |
Journal Article |
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Year |
2011 |
Publication |
General Relativity and Gravitation |
Abbreviated Journal |
Gen. Relativ. Gravit. |
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Volume |
43 |
Issue |
11 |
Pages |
3191-3199 |
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Keywords |
Dark energy; Observational cosmology; Particle-theory |
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Abstract |
It is assumed that the current cosmic acceleration is driven by a scalar field, the Lagrangian of which is a function of the kinetic term only, and that the luminosity distance is a given function of the red-shift. Upon comparison with baryon acoustic oscillations and cosmic microwave background data the parameters of the models are determined, and then the time evolution of the scalar field is determined by the dynamics using the cosmological equations. We find that the solution is very different than the corresponding solution when the non-relativistic matter is ignored, and that the universe enters the acceleration era at larger red-shift compared to the standard I > CDM model. |
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Address |
[Panotopoulos, G] Univ Valencia, Dept Fis Teor, E-46100 Burjassot, Spain, Email: Grigoris.Panotopoulos@uv.es |
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Thesis |
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Publisher |
Springer/Plenum Publishers |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Edition |
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ISSN |
0001-7701 |
ISBN |
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Notes |
WOS:000295982800015 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
no |
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Call Number |
IFIC @ elepoucu @ |
Serial |
782 |
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Permanent link to this record |
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Author |
LHCb Collaboration (Aaij, R. et al); Oyanguren, A.; Ruiz Valls, P. |
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Title |
Production of J/psi and Y mesons in pp collisions at root s=8 TeV |
Type |
Journal Article |
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Year |
2013 |
Publication |
Journal of High Energy Physics |
Abbreviated Journal |
J. High Energy Phys. |
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Volume |
06 |
Issue |
6 |
Pages |
064 - 31pp |
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Keywords |
Quarkonium; Heavy quark production; Particle and resonance production; Hadron-Hadron Scattering; Flavor physics |
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Abstract |
The production of J/psi and gamma mesons in pp collisions at root s = 8 TeV is studied with the LHCb detector. The J/psi and gamma mesons are reconstructed in the mu(+)mu(-) decay mode and the signal yields are determined with a fit to the mu(+)mu(-) invariant mass distributions. The analysis is performed in the rapidity range 2.0 < y < 4.5 and transverse momentum range 0 < PT < 14 (15) GeV/c of the J/psi (gamma) mesons. The J/psi and gamma production cross-sections and the fraction of J/psi mesons from b-hadron decays are measured as a function of the meson P-T and y. |
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Address |
[Bediaga, I.; De Miranda, J. M.; Ferreira Rodrigues, F.; Massafferri, A.; Nasteva, I.; dos Reis, A. C.] Ctr Brasileiro Pesquisas Fis, Rio De Janeiro, Brazil, Email: Ciulia.Manca@cern.ch |
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Corporate Author |
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Thesis |
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Publisher |
Springer |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1029-8479 |
ISBN |
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Area |
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Conference |
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Notes |
WOS:000321381800010 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ pastor @ |
Serial |
1536 |
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Permanent link to this record |