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Author Tortola, M.
Title Status of three-neutrino oscillation parameters Type Journal Article
Year 2013 Publication Fortschritte der Physik-Progress of Physics Abbreviated Journal Fortschritte Phys.-Prog. Phys.
Volume 61 Issue 4-5 Pages 427-440
Keywords Neutrino mass and mixing; neutrino oscillations; solar and atmospheric neutrinos; reactor and accelerator neutrinos
Abstract Here we review the current status of global fits to neutrino oscillation data within the three-flavour framework. In our analysis we include the most recent data from solar and atmospheric neutrino experiments as well as the latest results from the long-baseline accelerator neutrino experiments and the recent measurements of reactor neutrino disappearance reported by Double Chooz, Daya Bay and RENO. We present updated determinations for the two neutrino mass splittings and the three mixing angles responsible for neutrino oscillations that, for the first time, have all been measured with 1 sigma accuracies ranging from 3 to 15%. A weak sensitivity for the CP violating phase is also reported from the global analysis.
Address Univ Valencia, Inst Fis Corpuscular, AHEP Grp, CSIC, Valencia 46071, Spain, Email: mariam@ific.uv.es
Corporate Author Thesis
Publisher (down) Wiley-V C H Verlag Gmbh Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0015-8208 ISBN Medium
Area Expedition Conference
Notes WOS:000317019900005 Approved no
Is ISI yes International Collaboration no
Call Number IFIC @ pastor @ Serial 1411
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Author Reid, B.A. et al; de Putter, R.
Title The clustering of galaxies in the SDSS-III Baryon Oscillation Spectroscopic Survey: measurements of the growth of structure and expansion rate at z=0.57 from anisotropic clustering Type Journal Article
Year 2012 Publication Monthly Notices of the Royal Astronomical Society Abbreviated Journal Mon. Not. Roy. Astron. Soc.
Volume 426 Issue 4 Pages 2719-2737
Keywords galaxies: haloes; galaxies: statistics; cosmological parameters; large-scale structure of Universe
Abstract We analyse the anisotropic clustering of massive galaxies from the Sloan Digital Sky Survey III Baryon Oscillation Spectroscopic Survey (BOSS) Data Release 9 (DR9) sample, which consists of 264-283 galaxies in the redshift range 0.43 < z < 0.7 spanning 3275 deg(2). Both peculiar velocities and errors in the assumed redshiftdistance relation (AlcockPaczynski effect) generate correlations between clustering amplitude and orientation with respect to the line of sight. Together with the sharp baryon acoustic oscillation (BAO) standard ruler, our measurements of the broad-band shape of the monopole and quadrupole correlation functions simultaneously constrain the comoving angular diameter distance (2190 +/- 61 Mpc) to z = 0.57, the Hubble expansion rate at z = 0.57 (92.4 +/- 4.5 km s(-1) Mpc(-1)) and the growth rate of structure at that same redshift (d(sigma 8)/d ln a = 0.43 +/- 0.069). Our analysis provides the best current direct determination of both DA and H in galaxy clustering data using this technique. If we further assume a cold dark matter expansion history, our growth constraint tightens to d(sigma 8)/d ln a = 0.415 +/- 0.034. In combination with the cosmic microwave background, our measurements of D-A,H and d(sigma 8)/d ln a all separately require dark energy at z > 0.57, and when combined imply Omega(A) = 0.74 +/- 0.016, independent of the Universe's evolution at z < 0.57. All of these constraints assume scale-independent linear growth, and assume general relativity to compute both O(10 per cent) non-linear model corrections and our errors. In our companion paper, Samushia et al., we explore further cosmological implications of these observations.
Address [Reid, Beth A.; White, Martin; Bailey, Stephen; Roe, N. A.; Ross, Nicholas P.; Schlegel, David J.] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Berkeley, CA 94720 USA, Email: beth.ann.reid@gmail.com
Corporate Author Thesis
Publisher (down) Wiley-Blackwell Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0035-8711 ISBN Medium
Area Expedition Conference
Notes WOS:000310064400008 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 1192
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Author Hirn, J.; Garcia, J.E.; Montesinos-Navarro, A.; Sanchez-Martin, R.; Sanz, V.; Verdu, M.
Title A deep Generative Artificial Intelligence system to predict species coexistence patterns Type Journal Article
Year 2022 Publication Methods in Ecology and Evolution Abbreviated Journal Methods Ecol. Evol.
Volume 13 Issue Pages 1052-1061
Keywords artificial intelligence; direct interactions; generative adversarial networks; indirect interactions; species coexistence; variational AutoEncoders
Abstract Predicting coexistence patterns is a current challenge to understand diversity maintenance, especially in rich communities where these patterns' complexity is magnified through indirect interactions that prevent their approximation with classical experimental approaches. We explore cutting-edge Machine Learning techniques called Generative Artificial Intelligence (GenAI) to predict species coexistence patterns in vegetation patches, training generative adversarial networks (GAN) and variational AutoEncoders (VAE) that are then used to unravel some of the mechanisms behind community assemblage. The GAN accurately reproduces real patches' species composition and plant species' affinity to different soil types, and the VAE also reaches a high level of accuracy, above 99%. Using the artificially generated patches, we found that high-order interactions tend to suppress the positive effects of low-order interactions. Finally, by reconstructing successional trajectories, we could identify the pioneer species with larger potential to generate a high diversity of distinct patches in terms of species composition. Understanding the complexity of species coexistence patterns in diverse ecological communities requires new approaches beyond heuristic rules. Generative Artificial Intelligence can be a powerful tool to this end as it allows to overcome the inherent dimensionality of this challenge.
Address [Hirn, Johannes; Enrique Garcia, Jose; Sanz, Veronica] Univ Valencia, CSIC, Inst Fis Corpuscular IFIC, Valencia, Spain, Email: miguel.verdu@ext.uv.es
Corporate Author Thesis
Publisher (down) Wiley Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 2041-210x ISBN Medium
Area Expedition Conference
Notes WOS:000765239700001 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 5155
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Author Valdes-Cortez, C.; Niatsetski, Y.; Perez-Calatayud, J.; Ballester, F.; Vijande, J.
Title A Monte Carlo study of the relative biological effectiveness in surface brachytherapy Type Journal Article
Year 2022 Publication Medical Physics Abbreviated Journal Med. Phys.
Volume 49 Issue Pages 5576-5588
Keywords Monte Carlo; relative biological effectiveness; surface HDR brachytherapy
Abstract Purpose This work aims to simulate clustered DNA damage from ionizing radiation and estimate the relative biological effectiveness (RBE) for radionuclide (rBT)- and electronic (eBT)-based surface brachytherapy through a hybrid Monte Carlo (MC) approach, using realistic models of the sources and applicators. Methods Damage from ionizing radiation has been studied using the Monte Carlo Damage Simulation algorithm using as input the primary electron fluence simulated using a state-of-the-art MC code, PENELOPE-2018. Two Ir-192 rBT applicators, Valencia and Leipzig, one Co-60 source with a Freiburg Flap applicator (reference source), and two eBT systems, Esteya and INTRABEAM, have been included in this study implementing full realizations of their geometries as disclosed by the manufacturer. The role played by filtration and tube kilovoltage has also been addressed. Results For rBT, an RBE value of about 1.01 has been found for the applicators and phantoms considered. In the case of eBT, RBE values for the Esteya system show an almost constant RBE value of about 1.06 for all depths and materials. For INTRABEAM, variations in the range of 1.12-1.06 are reported depending on phantom composition and depth. Modifications in the Esteya system, filtration, and tube kilovoltage give rise to variations in the same range. Conclusions Current clinical practice does not incorporate biological effects in surface brachytherapy. Therefore, the same absorbed dose is administered to the patients independently on the particularities of the rBT or eBT system considered. The almost constant RBE values reported for rBT support that assumption regardless of the details of the patient geometry, the presence of a flattening filter in the applicator design, or even significant modifications in the photon energy spectra above 300 keV. That is not the case for eBT, where a clear dependence on the eBT system and the characteristics of the patient geometry are reported. A complete study specific for each eBT system, including detailed applicator characteristics (size, shape, filtering, among others) and common anatomical locations, should be performed before adopting an existing RBE value.
Address [Valdes-Cortez, Christian] Hosp Reg Antofagasta, Nucl Med Dept, Antofagasta, Chile, Email: cvalcort@gmail.com
Corporate Author Thesis
Publisher (down) Wiley Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0094-2405 ISBN Medium
Area Expedition Conference
Notes WOS:000811709400001 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 5262
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Author SCiMMA and SNEWS Collaborations (Baxter, A.L. et al); Colomer, M.
Title Collaborative experience between scientific software projects using Agile Scrum development Type Journal Article
Year 2022 Publication Software-Practice & Experience Abbreviated Journal Softw.-Pract. Exp.
Volume 52 Issue Pages 2077-2096
Keywords Agile; cyberinfrastructure; multimessenger astrophysics; scientific computing; software development
Abstract Developing sustainable software for the scientific community requires expertise in software engineering and domain science. This can be challenging due to the unique needs of scientific software, the insufficient resources for software engineering practices in the scientific community, and the complexity of developing for evolving scientific contexts. While open-source software can partially address these concerns, it can introduce complicating dependencies and delay development. These issues can be reduced if scientists and software developers collaborate. We present a case study wherein scientists from the SuperNova Early Warning System collaborated with software developers from the Scalable Cyberinfrastructure for Multi-Messenger Astrophysics project. The collaboration addressed the difficulties of open-source software development, but presented additional risks to each team. For the scientists, there was a concern of relying on external systems and lacking control in the development process. For the developers, there was a risk in supporting a user-group while maintaining core development. These issues were mitigated by creating a second Agile Scrum framework in parallel with the developers' ongoing Agile Scrum process. This Agile collaboration promoted communication, ensured that the scientists had an active role in development, and allowed the developers to evaluate and implement the scientists' software requirements. The collaboration provided benefits for each group: the scientists actuated their development by using an existing platform, and the developers utilized the scientists' use-case to improve their systems. This case study suggests that scientists and software developers can avoid scientific computing issues by collaborating and that Agile Scrum methods can address emergent concerns.
Address [Baxter, Amanda L.; Clark, Michael; Kopec, Abigail; Lang, Rafael F.; Li, Shengchao; Linvill, Mark W.; Milisavljevic, Danny; Weil, Kathryn E.] Purdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USA, Email: adepoian@purdue.edu;
Corporate Author Thesis
Publisher (down) Wiley Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0038-0644 ISBN Medium
Area Expedition Conference
Notes WOS:000830363800001 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 5305
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Author Assam, I.; Vijande, J.; Ballester, F.; Perez-Calatayud, J.; Poppe, B.; Siebert, F.A.
Title Evaluation of dosimetric effects of metallic artifact reduction and tissue assignment on Monte Carlo dose calculations for I-125 prostate implants Type Journal Article
Year 2022 Publication Medical Physics Abbreviated Journal Med. Phys.
Volume 49 Issue Pages 6195-6208
Keywords metallic artifact reduction; Monte Carlo dosimetry; post-implant CT; prostate brachytherapy; tissue assignment schemes; voxelized virtual patient model
Abstract Purpose Monte Carlo (MC) simulation studies, aimed at evaluating the magnitude of tissue heterogeneity in I-125 prostate permanent seed implant brachytherapy (BT), customarily use clinical post-implant CT images to generate a virtual representation of a realistic patient model (virtual patient model). Metallic artifact reduction (MAR) techniques and tissue assignment schemes (TAS) are implemented on the post-implant CT images to mollify metallic artifacts due to BT seeds and to assign tissue types to the voxels corresponding to the bright seed spots and streaking artifacts, respectively. The objective of this study is to assess the combined influence of MAR and TAS on MC absorbed dose calculations in post-implant CT-based phantoms. The virtual patient models used for I-125 prostate implant MC absorbed dose calculations in this study are derived from the CT images of an external radiotherapy prostate patient without BT seeds and prostatic calcifications, thus averting the need to implement MAR and TAS. Methods The geometry of the IsoSeed I25.S17plus source is validated by comparing the MC calculated results of the TG-43 parameters for the line source approximation with the TG-43U1S2 consensus data. Four MC absorbed dose calculations are performed in two virtual patient models using the egs_brachy MC code: (1) TG-43-based D-w,w-TG(43), (2) D-w,D-w-MBDC that accounts for interseed scattering and attenuation (ISA), (3) D-m,D-m that examines ISA and tissue heterogeneity by scoring absorbed dose in tissue, and (4) D-w,D-m that unlike D-m,D-m scores absorbed dose in water. The MC absorbed doses (1) and (2) are simulated in a TG-43 patient phantom derived by assigning the densities of every voxel to 1.00 g cm(-3) (water), whereas MC absorbed doses (3) and (4) are scored in the TG-186 patient phantom generated by mapping the mass density of each voxel to tissue according to a CT calibration curve. The MC absorbed doses calculated in this study are compared with VariSeed v8.0 calculated absorbed doses. To evaluate the dosimetric effect of MAR and TAS, the MC absorbed doses of this work (independent of MAR and TAS) are compared to the MC absorbed doses of different I-125 source models from previous studies that were calculated with different MC codes using post-implant CT-based phantoms generated by implementing MAR and TAS on post-implant CT images. Results The very good agreement of TG-43 parameters of this study and the published consensus data within 3% validates the geometry of the IsoSeed I25.S17plus source. For the clinical studies, the TG-43-based calculations show a D-90 overestimation of more than 4% compared to the more realistic MC methods due to ISA and tissue composition. The results of this work generally show few discrepancies with the post-implant CT-based dosimetry studies with respect to the D-90 absorbed dose metric parameter. These discrepancies are mainly Type B uncertainties due to the different I-125 source models and MC codes. Conclusions The implementation of MAR and TAS on post-implant CT images have no dosimetric effect on the I-125 prostate MC absorbed dose calculation in post-implant CT-based phantoms.
Address [Assam, Isong; Siebert, Frank-Andre] UKSH, Clin Radiotherapy Radiooncol, Campus Kiel, Kiel, Germany, Email: Isong.Assam@uksh.de
Corporate Author Thesis
Publisher (down) Wiley Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0094-2405 ISBN Medium
Area Expedition Conference
Notes WOS:000835807200001 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 5321
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Author Richart, J.; Otal, A.; Rodriguez, S.; Nicolas, A.I.; DePiaggio, M.; Santos, M.; Vijande, J.; Ballester, F.; Perez-Calatayud, J.
Title A practical MRI-based reconstruction method for a new endocavitary and interstitial gynaecological template Type Journal Article
Year 2015 Publication Journal of Contemporary Brachytherapy Abbreviated Journal J. Contemp. Brachytherapy
Volume 7 Issue 5 Pages 407-414
Keywords brachytherapy template; catheter reconstruction; gynecological template; interstitial implants
Abstract Purpose: There are perineal templates for interstitial implants such as MUPIT and Syed applicators. Their limitations are the intracavitary component deficit and the necessity to use computed tomography (CT) for treatment planning since both applicators are non-magnetic resonance imaging (MRI) compatibles. To overcome these problems, a new template named Template Benidorm (TB) has been recently developed. Titanium needles are usually reconstructed based on their own artifacts, mainly in T1-weighted sequence, using the void on the tip as the needle tip position. Nevertheless, patient tissues surrounding the needles present heterogeneities that complicate the accurate identification of these artifact patterns. The purpose of this work is to improve the titanium needle reconstruction uncertainty for the TB case using a simple method based on the free needle lengths and typical MRI pellets markers. Material and methods: The proposed procedure consists on the inclusion of three small A-vitamin pellets (hyper-intense on MRI images) compressed by both applicator plates defining the central plane of the plate's arrangement. The needles used are typically 20 cm in length. For each needle, two points are selected defining the straight line. From such line and the plane equations, the intersection can be obtained, and using the free length (knowing the offset distance), the coordinates of the needle tip can be obtained. The method is applied in both T1W and T2W acquisition sequences. To evaluate the inter-observer variation of the method, three implants of T1W and another three of T2W have been reconstructed by two different medical physicists with experience on these reconstructions. Results and conclusions: The differences observed in the positioning were significantly smaller than 1 mm in all cases. The presented algorithm also allows the use of only T2W sequence either for contouring or reconstruction purposes. The proposed method is robust and independent of the visibility of the artifact at the tip of the needle.
Address [Richart, Jose; Otal, Antonio; Rodriguez, Silvia; DePiaggio, Marina; Santos, Manuel; Perez-Calatayud, Jose] Benidorm Hosp, Dept Radiotherapy, Alicante, Spain, Email: fballest@uv.es
Corporate Author Thesis
Publisher (down) Termedia Publishing House Ltd Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1689-832x ISBN Medium
Area Expedition Conference
Notes WOS:000365247600012 Approved no
Is ISI yes International Collaboration no
Call Number IFIC @ pastor @ Serial 2476
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Author Ancilotto, F.; Barranco, M.; Navarro, J.; Pi, M.
Title Cavitation of electron bubbles in liquid parahydrogen Type Journal Article
Year 2011 Publication Molecular Physics Abbreviated Journal Mol. Phys.
Volume 109 Issue 23-24 Pages 2757-2762
Keywords liquid parahydrogen; electron bubbles; density functional theory; capillary approximation
Abstract Within a finite-temperature density functional approach, we have investigated the structure of electron bubbles in liquid parahydrogen below the saturated vapour pressure, determining the critical pressure at which electron bubbles explode as a function of temperature. The electron-parahydrogen interaction has been modelled by a Hartree-type local potential fitted to the experimental value of the conduction band-edge for a delocalized electron in pH(2). We have found that the pressure for bubble explosion is, in absolute value, about a factor of two smaller than that of the homogeneous cavitation pressure in the liquid. Comparison with the results obtained within the capillary model shows the limitations of this approximation, especially as temperature increases.
Address [Barranco, Manuel; Pi, Marti] Univ Barcelona, Fac Fis, Dept ECM, E-08028 Barcelona, Spain, Email: manuel@ecm.ub.es
Corporate Author Thesis
Publisher (down) Taylor & Francis Ltd Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0026-8976 ISBN Medium
Area Expedition Conference
Notes WOS:000299109300007 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 930
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Author Ancilotto, F.; Barranco, M.; Navarro, J.; Pi, M.
Title A Density Functional Approach to Para-hydrogen at Zero Temperature Type Journal Article
Year 2016 Publication Journal of Low Temperature Physics Abbreviated Journal J. Low Temp. Phys.
Volume 185 Issue 1-2 Pages 26-38
Keywords Solid and liquid bulk para-hydrogen; Small para-hydrogen clusters; Density functional theory
Abstract We have developed a density functional (DF) built so as to reproduce either the metastable liquid or the solid equation of state of bulk para-hydrogen, as derived from quantum Monte Carlo zero temperature calculations. As an application, we have used it to study the structure and energetics of small para-hydrogen clusters made of up to molecules. We compare our results for liquid clusters with diffusion Monte Carlo (DMC) calculations and find a fair agreement between them. In particular, the transition found within DMC between hollow-core structures for small N values and center-filled structures at higher N values is reproduced. The present DF approach yields results for (pH) clusters indicating that for small N values a liquid-like character of the clusters prevails, while solid-like clusters are instead energetically favored for .
Address [Ancilotto, Francesco] Dipartimento Fis & Astron Galileo Galilei, Padua, Italy, Email: manuel@ecm.ub.edu
Corporate Author Thesis
Publisher (down) Springer/Plenum Publishers Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0022-2291 ISBN Medium
Area Expedition Conference
Notes WOS:000382142000003 Approved no
Is ISI yes International Collaboration yes
Call Number IFIC @ pastor @ Serial 2814
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Author Albiol, F.; Corbi, A.; Albiol, A.
Title Evaluation of modern camera calibration techniques for conventional diagnostic X-ray imaging settings Type Journal Article
Year 2017 Publication Radiological Physics and Technology Abbreviated Journal Radiol. Phys. Technol.
Volume 10 Issue 1 Pages 68-81
Keywords Conventional X-ray camera calibration; Detector resolution; Intrinsic and extrinsic parameters; Zhang's method; Direct linear transform; Tsai's approach
Abstract We explore three different alternatives for obtaining intrinsic and extrinsic parameters in conventional diagnostic X-ray frameworks: the direct linear transform (DLT), the Zhang method, and the Tsai approach. We analyze and describe the computational, operational, and mathematical background differences for these algorithms when they are applied to ordinary radiograph acquisition. For our study, we developed an initial 3D calibration frame with tin cross-shaped fiducials at specific locations. The three studied methods enable the derivation of projection matrices from 3D to 2D point correlations. We propose a set of metrics to compare the efficiency of each technique. One of these metrics consists of the calculation of the detector pixel density, which can be also included as part of the quality control sequence in general X-ray settings. The results show a clear superiority of the DLT approach, both in accuracy and operational suitability. We paid special attention to the Zhang calibration method. Although this technique has been extensively implemented in the field of computer vision, it has rarely been tested in depth in common radiograph production scenarios. Zhang's approach can operate on much simpler and more affordable 2D calibration frames, which were also tested in our research. We experimentally confirm that even three or four plane-image correspondences achieve accurate focal lengths.
Address [Albiol, Francisco; Corbi, Alberto] Univ Valencia, CSIC, Inst Fis Corpuscular, Valencia, Spain, Email: alberto.corbi@ific.uv.es
Corporate Author Thesis
Publisher (down) Springer Japan Kk Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1865-0333 ISBN Medium
Area Expedition Conference
Notes WOS:000405867100009 Approved no
Is ISI yes International Collaboration no
Call Number IFIC @ pastor @ Serial 3238
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