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Aparici, A., Santamaria, A., & Wudka, J. (2010). A model for right-handed neutrino magnetic moments. J. Phys. G, 37(7), 075012–12pp.
Abstract: A simple extension of the standard model providing Majorana magnetic moments to right-handed neutrinos is presented. The model contains, in addition to the standard model particles and right-handed neutrinos, just a singly charged scalar and a vector-like charged fermion. The phenomenology of the model is analysed and its implications in cosmology, astrophysics and lepton flavour violating processes are extracted. If light enough, the charged particles responsible for the right-handed neutrino magnetic moments could copiously be produced at the Large Hadron Collider.
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Sanjuan, R., Nebot, M., Chirico, N., Mansky, L. M., & Belshaw, R. (2010). Viral Mutation Rates. J. Virol., 84(19), 9733–9748.
Abstract: Accurate estimates of virus mutation rates are important to understand the evolution of the viruses and to combat them. However, methods of estimation are varied and often complex. Here, we critically review over 40 original studies and establish criteria to facilitate comparative analyses. The mutation rates of 23 viruses are presented as substitutions per nucleotide per cell infection (s/n/c) and corrected for selection bias where necessary, using a new statistical method. The resulting rates range from 10(-8) to 10(-6) s/n/c for DNA viruses and from 10(-6) to 10(-4) s/n/c for RNA viruses. Similar to what has been shown previously for DNA viruses, there appears to be a negative correlation between mutation rate and genome size among RNA viruses, but this result requires further experimental testing. Contrary to some suggestions, the mutation rate of retroviruses is not lower than that of other RNA viruses. We also show that nucleotide substitutions are on average four times more common than insertions/deletions (indels). Finally, we provide estimates of the mutation rate per nucleotide per strand copying, which tends to be lower than that per cell infection because some viruses undergo several rounds of copying per cell, particularly double-stranded DNA viruses. A regularly updated virus mutation rate data set will be available at www.uv.es/rsanjuan/virmut.
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Rodriguez-Alvarez, M. J., Sanchez, F., Soriano, A., & Iborra, A. (2010). Sparse Givens resolution of large system of linear equations: Applications to image reconstruction. Math. Comput. Model., 52(7-8), 1258–1264.
Abstract: In medicine, computed tomographic images are reconstructed from a large number of measurements of X-ray transmission through the patient (projection data). The mathematical model used to describe a computed tomography device is a large system of linear equations of the form AX = B. In this paper we propose the QR decomposition as a direct method to solve the linear system. QR decomposition can be a large computational procedure. However, once it has been calculated for a specific system, matrices Q and R are stored and used for any acquired projection on that system. Implementation of the QR decomposition in order to take more advantage of the sparsity of the system matrix is discussed.
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Aguiar, P., Rafecas, M., Ortuño, J. E., Kontaxakis, G., Santos, A., Pavia, J., et al. (2010). Geometrical and Monte Carlo projectors in 3D PET reconstruction. Med. Phys., 37(11), 5691–5702.
Abstract: Purpose: In the present work, the authors compare geometrical and Monte Carlo projectors in detail. The geometrical projectors considered were the conventional geometrical Siddon ray-tracer (S-RT) and the orthogonal distance-based ray-tracer (OD-RT), based on computing the orthogonal distance from the center of image voxel to the line-of-response. A comparison of these geometrical projectors was performed using different point spread function (PSF) models. The Monte Carlo-based method under consideration involves an extensive model of the system response matrix based on Monte Carlo simulations and is computed off-line and stored on disk. Methods: Comparisons were performed using simulated and experimental data of the commercial small animal PET scanner rPET. Results: The results demonstrate that the orthogonal distance-based ray-tracer and Siddon ray-tracer using PSF image-space convolutions yield better images in terms of contrast and spatial resolution than those obtained after using the conventional method and the multiray-based S-RT. Furthermore, the Monte Carlo-based method yields slight improvements in terms of contrast and spatial resolution with respect to these geometrical projectors. Conclusions: The orthogonal distance-based ray-tracer and Siddon ray-tracer using PSF image-space convolutions represent satisfactory alternatives to factorizing the system matrix or to the conventional on-the-fly ray-tracing methods for list-mode reconstruction, where an extensive modeling based on Monte Carlo simulations is unfeasible.
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Ballester, F., Granero, D., Perez-Calatayud, J., Venselaar, J. L. M., & Rivard, M. J. (2010). Study of encapsulated Tm-170 sources for their potential use in brachytherapy. Med. Phys., 37(4), 1629–1637.
Abstract: Methods: The authors have assumed a theoretical Tm-170 cylindrical source encapsulated with stainless steel and typical dimensions taken from the currently available HDR Ir-192 brachytherapy sources. The dose-rate distribution was calculated for this source using the GEANT4 Monte Carlo (MC) code considering both photon and electron Tm-170 spectra. The AAPM TG-43 U1 brachytherapy dosimetry parameters were derived. To study general properties of Tm-170 encapsulated sources, spherical sources encapsulated with stainless steel and platinum were also studied. Moreover, the influence of small variations in the active core and capsule dimensions on the dosimetric characteristics was assessed. Treatment times required for a Tm-170 source were compared to those for Ir-192 and Yb-169 for the same contained activity. Results: Due to the energetic beta spectrum and the large electron yield, the bremsstrahlung contribution to the dose was of the same order of magnitude as from the emitted gammas and characteristic x rays. Moreover, the electron spectrum contribution to the dose was significant up to 4 mm from the source center compared to the photon contribution. The dose-rate constant Lambda of the cylindrical source was 1.23 cGy h(-1) U-1. The behavior of the radial dose function showed promise for applications in brachytherapy. Due to the electron spectrum, the anisotropy was large for r < 6 mm. Variations in manufacturing tolerances did not significantly influence the final dosimetry data when expressed in cGy h(-1) U-1. For typical capsule dimensions, maximum reference dose rates of about 0.2, 10, and 2 Gy min(-1) would then be obtained for Tm-170, Ir-192, and Yb-169, respectively, resulting in treatment times greater than those for HDR Ir-192 brachytherapy. Conclusions: The dosimetric characteristics of source designs exploiting the low photon energy of Tm-170 were studied for potential application in HDR-brachytherapy. Dose-rate distributions were obtained for cylindrical and simplified spherical Tm-170 source designs (stainless steel and platinum capsule materials) using MC calculations. Despite the high activity of Tm-170, calculated treatment times were much longer than for Ir-192.
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Rivard, M. J., Granero, D., Perez-Calatayud, J., & Ballester, F. (2010). Influence of photon energy spectra from brachytherapy sources on Monte Carlo simulations of kerma and dose rates in water and air. Med. Phys., 37(2), 869–876.
Abstract: Methods: For Ir-192, I-125, and Pd-103, the authors considered from two to five published spectra. Spherical sources approximating common brachytherapy sources were assessed. Kerma and dose results from GEANT4, MCNP5, and PENELOPE-2008 were compared for water and air. The dosimetric influence of Ir-192, I-125, and Pd-103 spectral choice was determined. Results: For the spectra considered, there were no statistically significant differences between kerma or dose results based on Monte Carlo code choice when using the same spectrum. Water-kerma differences of about 2%, 2%, and 0.7% were observed due to spectrum choice for Ir-192, I-125, and Pd-103, respectively (independent of radial distance), when accounting for photon yield per Bq. Similar differences were observed for air-kerma rate. However, their ratio (as used in the dose-rate constant) did not significantly change when the various photon spectra were selected because the differences compensated each other when dividing dose rate by air-kerma strength. Conclusions: Given the standardization of radionuclide data available from the National Nuclear Data Center (NNDC) and the rigorous infrastructure for performing and maintaining the data set evaluations, NNDC spectra are suggested for brachytherapy simulations in medical physics applications.
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Agullo, I., Navarro-Salas, J., Olmo, G. J., & Parker, L. (2010). Acceleration radiation, transition probabilities and trans-Planckian physics. New J. Phys., 12, 095017–18pp.
Abstract: An important question in the derivation of the acceleration radiation, which also arises in Hawking's derivation of black hole radiance, is the need to invoke trans-Planckian physics in describing the creation of quanta. We point out that this issue can be further clarified by reconsidering the analysis in terms of particle detectors, transition probabilities and local two-point functions. By writing down separate expressions for the spontaneous-and induced-transition probabilities of a uniformly accelerated detector, we show that the bulk of the effect comes from the natural (non-trans-Planckian) scale of the problem, which largely diminishes the importance of the trans-Planckian sector. This is so, at least, when trans-Planckian physics is defined in a Lorentz-invariant way. This analysis also suggests how one can define and estimate the role of trans-Planckian physics in the Hawking effect itself.
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de Vega, I., Bañuls, M. C., & Perez, A. (2010). Effects of dissipation on an adiabatic quantum search algorithm. New J. Phys., 12, 123010–19pp.
Abstract: According to recent studies (Amin et al 2008 Phys. Rev. Lett. 100 060503), the effect of a thermal bath may improve the performance of a quantum adiabatic search algorithm. In this paper, we compare the effects of such a thermal environment on the algorithm performance with those of a structured environment similar to the one encountered in systems coupled to an electromagnetic field that exists within a photonic crystal. Whereas for all the parameter regimes explored here, the algorithm performance is worsened by contact with a thermal environment, the picture appears to be different when one considers a structured environment. In this case we show that by tuning the environment parameters to certain regimes, the algorithm performance can actually be improved with respect to the closed system case. Additionally, the relevance of considering the dissipation rates as complex quantities is discussed in both cases. More specifically, we find that the imaginary part of the rates cannot be neglected with the usual argument that it simply amounts to an energy shift and in fact influences crucially the system dynamics.
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ATLAS Collaboration(Adragna, P. et al), Castelo, J., Castillo Gimenez, V., Cuenca, C., Ferrer, A., Fullana, E., et al. (2010). Measurement of pion and proton response and longitudinal shower profiles up to 20 nuclear interaction lengths with the ATLAS Tile calorimeter. Nucl. Instrum. Methods Phys. Res. A, 615(2), 158–181.
Abstract: The response of pions and protons in the energy range of 20-180 GeV, produced at CERN's SPS H8 test-beam line in the ATLAS iron-scintillator Tile hadron calorimeter, has been measured. The test-beam configuration allowed the measurement of the longitudinal shower development for pions and protons up to 20 nuclear interaction lengths. It was found that pions penetrate deeper in the calorimeter than protons. However, protons induce showers that are wider laterally to the direction of the impinging particle. Including the measured total energy response, the pion-to-proton energy ratio and the resolution, all observations are consistent with a higher electromagnetic energy fraction in pion-induced showers. The data are compared with GEANT4 simulations using several hadronic physics lists. The measured longitudinal shower profiles are described by an analytical shower parametrization within an accuracy of 5-10%. The amount of energy leaking out behind the calorimeter is determined and parametrized as a function of the beam energy and the calorimeter depth. This allows for a leakage correction of test-beam results in the standard projective geometry.
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AGATA Collaboration, Doncel, M., Recchia, F., Quintana, B., Gadea, A., & Farnea, E. (2010). Experimental test of the background rejection, through imaging capability, of a highly segmented AGATA germanium detector. Nucl. Instrum. Methods Phys. Res. A, 622(3), 614–618.
Abstract: The development of highly segmented germanium detectors as well as the algorithms to identify the position of the interaction within the crystal opens the possibility to locate the gamma-ray source using Compton imaging algorithms. While the Compton-suppression shield, coupled to the germanium detector in conventional arrays, works also as an active filter against the gamma rays originated outside the target, the new generation of position sensitive gamma-ray detector arrays has to fully rely on tracking capabilities for this purpose. In specific experimental conditions, as the ones foreseen at radioactive beam facilities, the ability to discriminate background radiation improves the sensitivity of the gamma spectrometer. In this work we present the results of a measurement performed at the Laboratori Nazionali di Legnaro (LNL) aiming the evaluation of the AGATA detector capabilities to discriminate the origin of the gamma rays on an event-by-event basis. It will be shown that, exploiting the Compton scattering formula, it is possible to track back gamma rays coming from different positions, assigning them to specific emitting locations. These imaging capabilities are quantified for a single crystal AGATA detector.
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