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Rinaldi, M., Scopetta, S., Traini, M., & Vento, V. (2015). Double Parton Distributions in Light-Front Constituent Quark Models. Few-Body Syst., 56(6-9), 515–521.
Abstract: Double parton distribution functions (dPDF), accessible in high energy proton-proton and proton-nucleus collisions, encode information on how partons inside a proton are correlated among each other and could represent a tool to explore the 3D proton structure. In recent papers, double parton correlations have been studied in the valence quark region, by means of constituent quark models. This framework allows to understand clearly the dynamical origin of the correlations and to establish which, among the features of the results, are model independent. Recent relevant results, obtained in a relativistic light-front scheme, able to overcome some drawbacks of previous calculations, such as the poor support, will be presented. Peculiar transverse momentum correlations, generated by the correct treatment of the boosts, are obtained. The role of spin correlations will be also shown. In this covariant approach, the symmetries of the dPDFs are unambiguously reproduced. The study of the QCD evolution of the model results has been performed in the valence sector, showing that, in some cases, the effect of evolution does not cancel that of correlations.
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Ames, S. K., Gardner, S. N., Marti, J. M., Slezak, T. R., Gokhale, M. B., & Allen, J. E. (2015). Using populations of human and microbial genomes for organism detection in metagenomes. Genome Res., 25(7), 1056–1067.
Abstract: Identifying causative disease agents in human patients from shotgun metagenomic sequencing (SMS) presents a powerful tool to apply when other targeted diagnostics fail. Numerous technical challenges remain, however, before SMS can move beyond the role of research tool. Accurately separating the known and unknown organism content remains difficult, particularly when SMS is applied as a last resort. The true amount of human DNA that remains in a sample after screening against the human reference genome and filtering nonbiological components left from library preparation has previously been underreported. In this study, we create the most comprehensive collection of microbial and reference-free human genetic variation available in a database optimized for efficient metagenomic search by extracting sequences from GenBank and the 1000 Genomes Project. The results reveal new human sequences found in individual Human Microbiome Project (HMP) samples. Individual samples contain up to 95% human sequence, and 4% of the individual HMP samples contain 10% or more human reads. Left unidentified, human reads can complicate and slow down further analysis and lead to inaccurately labeled microbial taxa and ultimately lead to privacy concerns as more human genome data is collected.
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Boronat, M., Marinas, C., Frey, A., Garcia, I., Schwenker, B., Vos, M., et al. (2015). Physical Limitations to the Spatial Resolution of Solid-State Detectors. IEEE Trans. Nucl. Sci., 62(1), 381–386.
Abstract: In this paper we explore the effect of delta-ray emission and fluctuations in the signal deposition on the detection of charged particles in silicon-based detectors. We show that these two effects ultimately limit the resolution that can be achieved by interpolation of the signal in finely segmented position-sensitive solid-state devices.
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Egea Canet, F. J. et al, Gadea, A., & Huyuk, T. (2015). A New Front-End High-Resolution Sampling Board for the New-Generation Electronics of EXOGAM2 and NEDA Detectors. IEEE Trans. Nucl. Sci., 62(3), 1056–1062.
Abstract: This paper presents the final design and results of the FADC Mezzanine for the EXOGAM (EXOtic GAMma array spectrometer) and NEDA (Neutron Detector Array) detectors. The measurements performed include those of studying the effective number of bits, the energy resolution using HP-Ge detectors, as well as timing histograms and discrimination performance. Finally, the conclusion shows how a common digitizing device has been integrated in the experimental environment of two very different detectors which combine both low-noise acquisition and fast sampling rates. Not only the integration fulfilled the expected specifications on both systems, but it also showed how a study of synergy between detectors could lead to the reduction of resources and time by applying a common strategy.
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Egea Canet, F. J. et al, Gadea, A., & Huyuk, T. (2015). Digital Front-End Electronics for the Neutron Detector NEDA. IEEE Trans. Nucl. Sci., 62(3), 1063–1069.
Abstract: This paper presents the design of the NEDA (Neutron Detector Array) electronics, a first attempt to involve the use of digital electronics in large neutron detector arrays. Starting from the front-end modules attached to the PMTs (PhotoMultiplier Tubes) and ending up with the data processing workstations, a comprehensive electronic system capable of dealing with the acquisition and pre-processing of the neutron array is detailed. Among the electronic modules required, we emphasize the front-end analog processing, the digitalization, digital pre-processing and communications firmware, as well as the integration of the GTS (Global Trigger and Synchronization) system, already used successfully in AGATA (Advanced Gamma Tracking Array). The NEDA array will be available for measurements in 2016.
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