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Figueroa, D. G., Florio, A., Torrenti, F., & Valkenburg, W. (2023). CosmoLattice: A modern code for lattice simulations of scalar and gauge field dynamics in an expanding universe. Comput. Phys. Commun., 283, 108586–13pp.
Abstract: This paper describes CosmoGattice, a modern package for lattice simulations of the dynamics of interacting scalar and gauge fields in an expanding universe. CosmoGattice incorporates a series of features that makes it very versatile and powerful: i) it is written in C++ fully exploiting the object oriented programming paradigm, with a modular structure and a clear separation between the physics and the technical details, ii) it is MPI-based and uses a discrete Fourier transform parallelized in multiple spatial dimensions, which makes it specially appropriate for probing scenarios with well -separated scales, running very high resolution simulations, or simply very long ones, iii) it introduces its own symbolic language, defining field variables and operations over them, so that one can introduce differential equations and operators in a manner as close as possible to the continuum, iv) it includes a library of numerical algorithms, ranging from O(delta t(2)) to O(delta t(10)) methods, suitable for simulating global and gauge theories in an expanding grid, including the case of 'self-consistent' expansion sourced by the fields themselves. Relevant observables are provided for each algorithm (e.g. energy densities, field spectra, lattice snapshots) and we note that, remarkably, all our algorithms for gauge theories (Abelian or non-Abelian) always respect the Gauss constraint to machine precision. Program summary Program Title:: CosmoGattice CPC Library link to program files: https://doi .org /10 .17632 /44vr5xssc6 .1 Developer's repository link: http://github .com /cosmolattice /cosmolattice Licensing provisions: MIT Programming language: C++, MPI Nature of problem: The phenomenology of high energy physics in the early universe is typically characterized by non-linear dynamics, which cannot be captured accurately with analytical techniques. In order to fully understand the non-linearities developed in a given scenario, one needs to carry out lattice simulations. A number of public packages for lattice simulations have appeared over the years, but most of them are only capable of simulating scalar fields. However, realistic models of particle physics do contain other kind of field species, such as (Abelian or non-Abelian) gauge fields, whose non-linear dynamics can also play a relevant role in the early universe. Tensor modes representing gravitational waves are also naturally expected in many scenarios. Solution method: CosmoGattice represents a modern code for lattice simulations of scalar-gauge field theories in an expanding universe. It allows for the simulation of the evolution of interacting (singlet) scalar fields, charged scalar fields under U(1) and/or SU(2) gauge groups, and the corresponding associated Abelian and/or non-Abelian gauge fields. From version 1.1 onward, CosmoGattice also allows to simulate the production of gravitational waves. Simulations can be done either in a flat space-time background, or in a homogeneous and isotropic (spatially flat) expanding FLRW background. CosmoGattice provides symplectic integrators, with accuracy ranging from O (delta t(2)) up to O(delta t(10)), to simuate the non-linear dynamics of the appropriate fields in comoving three-dimensional lattices. The code is parallelized with MPI, and uses a discrete Fourier Transform parallelized in multiple spatial dimensions, which makes it a very powerful code for probing physical problems with well-separated scales. Moreover, the code has been designed as a `platform' to implement any system of dynamical equations suitable for discretization on a lattice.
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Martin Lozano, V., Sanda Seoane, R. M., & Zurita, J. (2023). Z'-explorer 2.0: Reconnoitering the dark matter landscape. Comput. Phys. Commun., 288, 108729–14pp.
Abstract: We introduce version 2.0 of Z'-explorer, a software tool that provides a simple, fast, and user-friendly test of models with an extra U (1) gauge boson (Z') against experimental LHC results. The main novelty of the second version is the inclusion of missing energy searches, as the first version only included final states into SM particles. Hence Z'-explorer 2.0 is able to test dark matter models where the Z' acts as an s-channel mediator between the Standard Model and the dark sector, a widespread benchmark employed by the ATLAS and CMS experimental collaborations. To this end, we perform here the first public reinterpretation of the most recent ATLAS mono-jet search with 139 fb-1. In addition, the corresponding searches in the visible final states have also been updated. We illustrate the power of our code by re -obtaining public plots and also showing novel results. In particular, we study the cases where the Z' couples strongly to top quarks (top-philic), where dark matter couples with a mixture of vector and axial-vector couplings, and also perform a scan in the parameter space of a string inspired Stuckelberg model. Z'-explorer 2.0 is publicly available on GitHub. Program summary Program Title: Z'-explorer 2.0 CPC Library link to program files: https://doi .org /10 .17632 /k7tdp8kwgf .2 Developer's repository link: https://github .com /ro -sanda /Z--explorer-2 .0 Licensing provisions: GPLv3 Programming language: C++ and bash Nature of problem: New SM neutral gauge bosons, Z', are ubiquitously present in models of New Physics. In order to confront these models versus a large and ever-growing library of LHC searches, Z'-explorer 1.0 had already included all final states including Standard Model particles. Notably, the previous version of this tool lacked the so-called invisible final states manifested as a momentum imbalance in the transverse plane (“missing energy”). These searches help to probe mediators into a dark sector, where a dark matter candidate resides. Solution method: Z'-explorer encodes the production cross sections for Z' bosons at the LHC as a function of their mass, allowing for a fast evaluation of the exclusion limits. This version of Z'-explorer includes a careful validation of the latest search with one energetic jet (mono-jet) performed by the ATLAS collaboration. Hence one can now test if a given point in parameter space is excluded by both visible and invisible searches. The modular structure of the code has been kept, which allows for potential additions (low-energy constraints, flavor, extrapolation to future colliders).
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KM3NeT Collaboration(Aiello, S. et al), Alves Garre, S., Calvo, D., Carretero, V., Garcia Soto, A., Gozzini, S. R., et al. (2024). Embedded software of the KM3NeT central logic board. Comput. Phys. Commun., 296, 109036–15pp.
Abstract: The KM3NeT Collaboration is building and operating two deep sea neutrino telescopes at the bottom of the Mediterranean Sea. The telescopes consist of latices of photomultiplier tubes housed in pressure-resistant glass spheres, called digital optical modules and arranged in vertical detection units. The two main scientific goals are the determination of the neutrino mass ordering and the discovery and observation of high-energy neutrino sources in the Universe. Neutrinos are detected via the Cherenkov light, which is induced by charged particles originated in neutrino interactions. The photomultiplier tubes convert the Cherenkov light into electrical signals that are acquired and timestamped by the acquisition electronics. Each optical module houses the acquisition electronics for collecting and timestamping the photomultiplier signals with one nanosecond accuracy. Once finished, the two telescopes will have installed more than six thousand optical acquisition nodes, completing one of the more complex networks in the world in terms of operation and synchronization. The embedded software running in the acquisition nodes has been designed to provide a framework that will operate with different hardware versions and functionalities. The hardware will not be accessible once in operation, which complicates the embedded software architecture. The embedded software provides a set of tools to facilitate remote manageability of the deployed hardware, including safe reconfiguration of the firmware. This paper presents the architecture and the techniques, methods and implementation of the embedded software running in the acquisition nodes of the KM3NeT neutrino telescopes. Program summary Program title: Embedded software for the KM3NeT CLB CPC Library link to program files: https://doi.org/10.17632/s847hpsns4.1 Licensing provisions: GNU General Public License 3 Programming language: C Nature of problem: The challenge for the embedded software in the KM3NeT neutrino telescope lies in orchestrating the Digital Optical Modules (DOMs) to achieve the synchronized data acquisition of the incoming optical signals. The DOMs are the crucial component responsible for capturing neutrino interactions deep underwater. The embedded software must configure and precisely time the operation of each DOM. Any deviation or timing mismatch could compromise data integrity, undermining the scientific value of the experiment. Therefore, the embedded software plays a critical role in coordinating, synchronizing, and operating these modules, ensuring they work in unison to capture and process neutrino signals accurately, ultimately advancing our understanding of fundamental particles in the Universe. Solution method: The embedded software on the DOMs provides a solution based on a C-based bare-metal application, operating without a real-time embedded OS. It is loaded into the RAM during FPGA configuration, consuming less than 256 kB of RAM. The software architecture comprises two layers: system software and application. The former offers OS-like features, including a multitasking scheduler, firmware updates, peripheral drivers, a UDP-based network stack, and error handling utilities. The application layer contains a state machine ensuring consistent program states. It is navigated via slow control events, including external inputs and autonomous responses. Subsystems within the application code control specific acquisition electronics components via the associated driver abstractions. Additional comments including restrictions and unusual features: Due to the operation conditions of the neutrino telescope, where access is restricted, the embedded software implements a fail-safe procedure to reconfigure the firmware where the embedded software runs.
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Oliver, S., Rodriguez Bosca, S., & Gimenez-Alventosa, V. (2024). Enabling particle transport on CAD-based geometries for radiation simulations with penRed. Comput. Phys. Commun., 298, 109091–11pp.
Abstract: Geometry construction is a fundamental aspect of any radiation transport simulation, regardless of the Monte Carlo code being used. Typically, this process is tedious, time-consuming, and error-prone. The conventional approach involves defining geometries using mathematical objects or surfaces. However, this method comes with several limitations, especially when dealing with complex models, particularly those with organic shapes. Furthermore, since each code employs its own format and methodology for defining geometries, sharing and reproducing simulations among researchers becomes a challenging task. Consequently, many codes have implemented support for simulating over geometries constructed via Computer-Aided Design (CAD) tools. Unfortunately, this feature is lacking in penRed and other PENELOPE physics-based codes. Therefore, the objective of this work is to implement such support within the penRed framework. New version program summary Program Title: Parallel Engine for Radiation Energy Deposition (penRed) CPC Library link to program files: https://doi.org/10.17632/rkw6tvtngy.2 Developer's repository link: https://github.com/PenRed/PenRed Code Ocean capsule: https://codeocean.com/capsule/1041417/tree Licensing provisions: GNU Affero General Public License v3 Programming language: C++ standard 2011. Journal reference of previous version: V. Gimenez-Alventosa, V. Gimenez Gomez, S. Oliver, PenRed: An extensible and parallel Monte-Carlo framework for radiation transport based on PENELOPE, Computer Physics Communications 267 (2021) 108065. doi:https://doi.org/10.1016/j.cpc.2021.108065. Does the new version supersede the previous version?: Yes Reasons for the new version: Implements the capability to simulate on CAD constructed geometries, among many other features and fixes. Summary of revisions: All changes applied through the code versions are summarized in the file CHANGELOG.md in the repository package. Nature of problem: While Monte Carlo codes have proven valuable in simulating complex radiation scenarios, they rely heavily on accurate geometrical representations. In the same way as many other Monte Carlo codes, penRed employs simple geometric quadric surfaces like planes, spheres and cylinders to define geometries. However, since these geometric models offer a certain level of flexibility, these representations have limitations when it comes to simulating highly intricate and irregular shapes. Anatomic structures, for example, require detailed representations of organs, tissues and bones, which are difficult to achieve using basic geometric objects. Similarly, complex devices or intricate mechanical systems may have designs that cannot be accurately represented within the constraints of such geometric models. Moreover, when the complexity of the model increases, geometry construction process becomes more difficult, tedious, time-consuming and error-prone [2]. Also, as each Monte Carlo geometry library uses its own format and construction method, reproducing the same geometry among different codes is a challenging task. Solution method: To face the problems stated above, the objective of this work is to implement the capability to simulate using irregular and adaptable meshed geometries in the penRed framework. This kind of meshes can be constructed using Computer-Aided Design (CAD) tools, the use of which is very widespread and streamline the design process. This feature has been implemented in a new geometry module named “MESH_BODY” specific for this kind of geometries. This one is freely available and usable within the official penRed package1. It can be used since penRed version 1.9.3b and above.
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David, M., Borges, G., Gomes, J., Pina, J., Campos, I., Fernandez, E., et al. (2012). Software Provision Process For EGI. Comput. Inform., 31(1), 135–148.
Abstract: The European Grid Initiative (EGI) provides a sustainable pan-European Grid computing infrastructure for e-Science based on a network of regional and national Grids. The middleware driving this production infrastructure is constantly adapted to the changing needs of the EGI Community by deploying new features and phasing out other features and components that are no longer needed. Unlike previous e-Infrastructure projects, EGI does not develop its own middleware solution, but instead sources the required components from Technology Providers and integrates them in the Unified Middleware Distribution (UMD). In order to guarantee a high quality and reliable operation of the infrastructure, all UMD software must undergo a release process that covers the definition of the functional, performance and quality requirements, the verification of those requirements and testing in production environments.
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ANTARES Collaboration(van Haren, H. et al), Aguilar, J. A., Bigongiari, C., Dornic, D., Emanuele, U., Gomez-Gonzalez, J. P., et al. (2011). Acoustic and optical variations during rapid downward motion episodes in the deep north-western Mediterranean Sea. Deep-Sea Res. Part I-Oceanogr. Res. Pap., 58(8), 875–884.
Abstract: An Acoustic Doppler Current Profiler (ADCP) was moored at the deep-sea site of the ANTARES neutrino telescope near Toulon, France, thus providing a unique opportunity to compare high-resolution acoustic and optical observations between 70 and 170 m above the sea bed at 2475 m. The ADCP measured downward vertical currents of magnitudes up to 0.03 m s(-1) in late winter and early spring 2006. In the same period, observations were made of enhanced levels of acoustic reflection, interpreted as suspended particles including zooplankton, by a factor of about 10 and of horizontal currents reaching 0.35 m s(-1). These observations coincided with high light levels detected by the telescope, interpreted as increased bioluminescence. During winter 2006 deep dense-water formation occurred in the Ligurian subbasin, thus providing a possible explanation for these observations. However, the 10-20 days quasi-periodic episodes of high levels of acoustic reflection, light and large vertical currents continuing into the summer are not direct evidence of this process. It is hypothesized that the main process allowing for suspended material to be moved vertically later in the year is local advection, linked with topographic boundary current instabilities along the rim of the 'Northern Current'.
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Menendez, A., Esperante, D., Garcia-Olcina, R., Torres, J., Perez-Soler, J., Marco, R., et al. (2022). RF Acquisition System Based on μTCA for Testing of High-Gradient Acceleration Cavities. Electronics, 11(5), 720–22pp.
Abstract: The radio frequency (RF) laboratory hosted in the Corpuscular Physics Institute (IFIC) of the University of Valencia is designed to house a high-power and high-repetition-rate facility to test normal conduction RF accelerator cavities in the S-Band (2.9985 GHz) in order to perform R & D activities related to particle accelerator cavities. The system, which manages the entire process of RF signal generation, data acquisition and closed-loop control of the laboratory, is currently based on a modular and compact PXI platform system. This contribution details the development of a platform with similar features, but which is based on open architecture standards at both the hardware and software level. For this purpose, a complete system based on the μTCA platform has been developed. This new system must be able to work with accelerator cavities at other operating frequencies, such as 750 MHz, as well as to explore different options at firmware and software levels based on open-source codes.
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Real, D., Calvo, D., Zornoza, J. D., & Manzaneda, M. (2023). White Rabbit Expansion Board: Design, Architecture, and Signal Integrity Simulations. Electronics, 12(16), 3394–16pp.
Abstract: The White Rabbit protocol allows synchronization and communication via an optical link in an integrated, modular, and scalable manner. It provides a solution to those applications that have very demanding requirements in terms of synchronization. Field-programmable gate arrays are used to implement the protocol; additionally, special hardware is needed to provide the necessary clock signals used by the dual-mixer time difference for precise phase measurement. In the present work, an expansion board that allows for White Rabbit functionality is presented. The expansion board contains the oscillators required by the White Rabbit protocol, one running at 125 MHz and another at 124.922 MHZ. The architecture of this board includes two oscillator systems for tests and comparison. One is based on VCOs and another on crystal oscillators running at the desired frequencies. In addition, it incorporates a temperature sensor, from where the medium access control address is extracted, an electrically erasable programmable read-only memory, a pulse-per-second output, and a USB UART to access the White Rabbit IP core at the field-programmable gate array. Finally, to ensure the quality of the layout design and guarantee the level of synchronization desired, the results of the power and signal integrity simulations are also presented.
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n_TOF Collaboration(Patronis, N. et al), Babiano-Suarez, V., Balibrea Correa, J., Domingo-Pardo, C., Ladarescu, I., & Lerendegui-Marco, J. (2023). Status report of the n_TOF facility after the 2nd CERN long shutdown period. EPJ Tech. Instrum., 10(1), 13–10pp.
Abstract: During the second long shutdown period of the CERN accelerator complex (LS2, 2019-2021), several upgrade activities took place at the nTOF facility. The most important have been the replacement of the spallation target with a next generation nitrogen-cooled lead target. Additionally, a new experimental area, at a very short distance from the target assembly (the NEAR Station) was established. In this paper, the core commissioning actions of the new installations are described. The improvement in the nTOF infrastructure was accompanied by several detector development projects. All these upgrade actions are discussed, focusing mostly on the future perspectives of the n_TOF facility. Furthermore, some indicative current and future measurements are briefly reported.
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Lerendegui-Marco, J., Babiano-Suarez, V., Balibrea-Correa, J., Caballero, L., Calvo, D., Ladarescu, I., et al. (2024). Simultaneous Gamma-Neutron Vision device: a portable and versatile tool for nuclear inspections. EPJ Tech. Instrum., 11(1), 2–17pp.
Abstract: This work presents GN-Vision, a novel dual gamma-ray and neutron imaging system, which aims at simultaneously obtaining information about the spatial origin of gamma-ray and neutron sources. The proposed device is based on two position sensitive detection planes and exploits the Compton imaging technique for the imaging of gamma-rays. In addition, spatial distributions of slow- and thermal-neutron sources (<100 eV) are reconstructed by using a passive neutron pin-hole collimator attached to the first detection plane. The proposed gamma-neutron imaging device could be of prime interest for nuclear safety and security applications. The two main advantages of this imaging system are its high efficiency and portability, making it well suited for nuclear applications were compactness and real-time imaging is important. This work presents the working principle and conceptual design of the GN-Vision system and explores, on the basis of Monte Carlo simulations, its simultaneous gamma-ray and neutron detection and imaging capabilities for a realistic scenario where a Cf-252 source is hidden in a neutron moderating container.
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