|
Records |
Links |
|
Author |
Ames, S.K.; Gardner, S.N.; Marti, J.M.; Slezak, T.R.; Gokhale, M.B.; Allen, J.E. |
![find record details (via OpenURL) openurl](img/xref.gif)
|
|
Title |
Using populations of human and microbial genomes for organism detection in metagenomes |
Type |
Journal Article |
|
Year |
2015 |
Publication |
Genome Research |
Abbreviated Journal |
Genome Res. |
|
|
Volume |
25 |
Issue |
7 |
Pages |
1056-1067 |
|
|
Keywords |
|
|
|
Abstract |
Identifying causative disease agents in human patients from shotgun metagenomic sequencing (SMS) presents a powerful tool to apply when other targeted diagnostics fail. Numerous technical challenges remain, however, before SMS can move beyond the role of research tool. Accurately separating the known and unknown organism content remains difficult, particularly when SMS is applied as a last resort. The true amount of human DNA that remains in a sample after screening against the human reference genome and filtering nonbiological components left from library preparation has previously been underreported. In this study, we create the most comprehensive collection of microbial and reference-free human genetic variation available in a database optimized for efficient metagenomic search by extracting sequences from GenBank and the 1000 Genomes Project. The results reveal new human sequences found in individual Human Microbiome Project (HMP) samples. Individual samples contain up to 95% human sequence, and 4% of the individual HMP samples contain 10% or more human reads. Left unidentified, human reads can complicate and slow down further analysis and lead to inaccurately labeled microbial taxa and ultimately lead to privacy concerns as more human genome data is collected. |
|
|
Address |
[Ames, Sasha K.; Gokhale, Maya B.] Lawrence Livermore Natl Lab, Ctr Appl Sci Comp, Livermore, CA 94550 USA, Email: allen99@llnl.gov |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
Cold Spring Harbor Lab Press, Publications Dept |
Place of Publication |
|
Editor |
|
|
|
Language |
English |
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN ![sorted by ISSN field, descending order (down)](img/sort_desc.gif) |
1088-9051 |
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
|
|
|
Notes |
WOS:000357356900012 |
Approved |
no |
|
|
Is ISI |
yes |
International Collaboration |
yes |
|
|
Call Number |
IFIC @ pastor @ |
Serial |
2295 |
|
Permanent link to this record |
|
|
|
|
Author |
Pavez, C.; Pedreros, J.; Tarifeño-Saldivia, A.; Soto, L. |
![find record details (via OpenURL) openurl](img/xref.gif)
|
|
Title |
Observation of plasma jets in a table top plasma focus discharge |
Type |
Journal Article |
|
Year |
2015 |
Publication |
Physics of Plasmas |
Abbreviated Journal |
Phys. Plasmas |
|
|
Volume |
22 |
Issue |
4 |
Pages |
040705 - 5pp |
|
|
Keywords |
|
|
|
Abstract |
In the last years, medium size Z-pinch experiments operating at tens of kJ are being used to create supersonic plasma jets. Those experiments are produced with wire arrays and radial foils, and they are conducted in generators based on water-filled transmission lines. Also plasma jets have been observed in small X-pinch experiments operating at 1 kJ. In this work, observations of plasma jets produced in a table top plasma focus device by means of optical and digital interferometry are shown. The device was operated at only similar to 70J, achieving 50 kA in 150 ns. The plasma jets were observed after the pinch, in the region close and on the anode, along the axis. The electron density measured from the jets is in the range 10(24)-10(25) m(-3). From two consecutive plasma images separated 18 ns, the axial jet velocity was measured in the order of 4 x 10(4) m/s. |
|
|
Address |
[Pavez, Cristian; Pedreros, Jose; Tarifeno-Saldivia, Ariel; Soto, Leopoldo] CCHEN, Comis Chilena Energia Nucl, Santiago, Chile, Email: lsoto@cchen.cl |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
Amer Inst Physics |
Place of Publication |
|
Editor |
|
|
|
Language |
English |
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN ![sorted by ISSN field, descending order (down)](img/sort_desc.gif) |
1070-664x |
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
|
|
|
Notes |
WOS:000353837200006 |
Approved |
no |
|
|
Is ISI |
yes |
International Collaboration |
yes |
|
|
Call Number |
IFIC @ pastor @ |
Serial |
2400 |
|
Permanent link to this record |
|
|
|
|
Author |
LHCb Collaboration (Aaij, R. et al); Martinez-Vidal, F.; Oyanguren, A.; Ruiz Valls, P.; Sanchez Mayordomo, C. |
![goto web page (via DOI) doi](img/doi.gif)
|
|
Title |
Study of eta-eta ' mixing from measurement of B-(s)(0) -> J/psi eta((')) decay rates |
Type |
Journal Article |
|
Year |
2015 |
Publication |
Journal of High Energy Physics |
Abbreviated Journal |
J. High Energy Phys. |
|
|
Volume |
01 |
Issue |
1 |
Pages |
024 - 24pp |
|
|
Keywords |
Spectroscopy; Hadron-Hadron Scattering; QCD; Branching fraction; B physics |
|
|
Abstract |
A study of B and B-s(0) meson decays into J/psi eta and J/psi eta' final states is performed using a data set of proton-proton collisions at centre-of-mass energies of 7 and 8 TeV, collected by the LCHb experiment and corresponding to 3.0 fb(-1) of integrated luminosity. The decay B-0 -> J/psi eta' is observed for the first time. The following ratios of branching fractions are measured: B(B-0 -> J psi eta')/B(B-s(0) -> J psi eta') = (2.28 +/- 0.65 (stat) +/- 0.010 (syst) +/- 0.13 (f(s)/f(d)) x 10(-2) , B(B-0 -> J psi eta')/B(B-s(0) -> J psi eta') = (1.85 +/- 0.65 (stat) +/- 0.09 (syst) +/- 0.11 (f(s)/f(d)) x 10(-2) where the third uncertainty is related to the present knowledge of f(s)/f(d), the ratio between the probabilities for a b quark to form a B-s(0) or a B-0 meson. The branching fraction ratios are used to determine the parameters of eta-eta' meson mixing. In addition, the first evidence for the decay B-s(0) -> psi(2S)' is reported, and the relative branching fraction is measured, B(B-s(0) -> psi(2S)eta')/B(B-s(0) -> J psi eta') = (38.7 +/- 9.0 (stat) +/- 1.3 (syst) +/- 0.9(B)) x 10(-2), where the third uncertainty is due to the limited knowledge of the branching fractions of J/psi and psi(2S) mesons. |
|
|
Address |
[Bediaga, I.; Miranda, J. M. De; Ferreira Rodrigues, F.; Gomes, A.; Marchand, J. F.; Massafferri, A.; Reis, A. C. dos; Rodrigues, A. B.] CBPF, Rio De Janeiro, Brazil, Email: Ivan.Belyaev@itep.ru |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
Springer |
Place of Publication |
|
Editor |
|
|
|
Language |
English |
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN ![sorted by ISSN field, descending order (down)](img/sort_desc.gif) |
1029-8479 |
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
|
|
|
Notes |
WOS:000347685500001 |
Approved |
no |
|
|
Is ISI |
yes |
International Collaboration |
yes |
|
|
Call Number |
IFIC @ pastor @ |
Serial |
2077 |
|
Permanent link to this record |
|
|
|
|
Author |
ATLAS Collaboration (Aad, G. et al); Cabrera Urban, S.; Castillo Gimenez, V.; Costa, M.J.; Fassi, F.; Ferrer, A.; Fiorini, L.; Fuster, J.; Garcia, C.; Garcia Navarro, J.E.; Gonzalez de la Hoz, S.; Hernandez Jimenez, Y.; Higon-Rodriguez, E.; Irles Quiles, A.; Kaci, M.; King, M.; Lacasta, C.; Lacuesta, V.R.; March, L.; Marti-Garcia, S.; Mitsou, V.A.; Moles-Valls, R.; Oliver Garcia, E.; Pedraza Lopez, S.; Perez Garcia-Estañ, M.T.; Romero Adam, E.; Ros, E.; Salt, J.; Sanchez Martinez, V.; Soldevila, U.; Sanchez, J.; Torro Pastor, E.; Valero, A.; Valladolid Gallego, E.; Valls Ferrer, J.A.; Vos, M. |
![goto web page (via DOI) doi](img/doi.gif)
|
|
Title |
Measurement of the t(t)over-bar production cross-section as a function of jet multiplicity and jet transverse momentum in 7 TeV proton-proton collisions with the ATLAS detector |
Type |
Journal Article |
|
Year |
2015 |
Publication |
Journal of High Energy Physics |
Abbreviated Journal |
J. High Energy Phys. |
|
|
Volume |
01 |
Issue |
1 |
Pages |
020 - 67pp |
|
|
Keywords |
Hadron-Hadron Scattering |
|
|
Abstract |
The t (t) over bar production cross-section dependence on jet multiplicity and jet transverse momentum is reported for proton-proton collisions at a centre-of-mass energy of 7 TeV in the single-lepton channel. The data were collected with the ATLAS detector at the CERN Large Hadron Collider and comprise the full 2011 data sample corresponding to an integrated luminosity of 4.6 fb(-1). Differential cross-sections are presented as a function of the jet multiplicity for up to eight jets using jet transverse momentum thresholds of 25, 40, 60, and 80 GeV, and as a function of jet transverse momentum up to the fifth jet. The results are shown after background subtraction and corrections for all known detector effects, within a kinematic range closely matched to the experimental acceptance. Several QCD-based Monte Carlo models are compared with the results. Sensitivity to the parton shower modelling is found at the higher jet multiplicities, at high transverse momentum of the leading jet and in the transverse momentum spectrum of the fifth leading jet. The MC@NLO+HERWIG MC is found to predict too few events at higher jet multiplicities. |
|
|
Address |
[Jackson, P.; Soni, N.; White, M. J.] Univ Adelaide, Dept Phys, Adelaide, SA, Australia |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
Springer |
Place of Publication |
|
Editor |
|
|
|
Language |
English |
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN ![sorted by ISSN field, descending order (down)](img/sort_desc.gif) |
1029-8479 |
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
|
|
|
Notes |
WOS:000348072700001 |
Approved |
no |
|
|
Is ISI |
yes |
International Collaboration |
yes |
|
|
Call Number |
IFIC @ pastor @ |
Serial |
2102 |
|
Permanent link to this record |
|
|
|
|
Author |
LHCb Collaboration (Aaij, R. et al); Martinez-Vidal, F.; Oyanguren, A.; Ruiz Valls, P.; Sanchez Mayordomo, C. |
![goto web page (via DOI) doi](img/doi.gif)
|
|
Title |
Measurement of the Z plus b-jet cross-section in pp collisions at root s=7 TeV in the forward region |
Type |
Journal Article |
|
Year |
2015 |
Publication |
Journal of High Energy Physics |
Abbreviated Journal |
J. High Energy Phys. |
|
|
Volume |
01 |
Issue |
1 |
Pages |
064 - 15pp |
|
|
Keywords |
Hadron-Hadron Scattering |
|
|
Abstract |
The associated production of a Z boson or an off-shell photon gamma* with a bottom quark in the forward region is studied using proton-proton collisions at a centre-of-mass energy of 7TeV. The Z bosons are reconstructed in the Z/gamma* -> mu(+)mu(-) final state from muons with a transverse momentum larger than 20 GeV, while two transverse momentum thresholds are considered for jets (10 GeV and 20 GeV). Both muons and jets are reconstructed in the pseudorapidity range 2.0 < eta < 4.5. The results are based on data corresponding to 1.0 fb(-1) recorded in 2011 with the LHCb detector. The measurement of the Z+b-jet cross-section is normalized to the Z+jet cross-section. The measured cross-sections are (Z/ (mu+ mu-) + b-jet) = 295 60 (stat) 51 (syst) 10 (lumi) fb (0.1) for p T(jet) > 10 GeV, and (Z/ (mu+ mu-) + b-jet) = 128 36 (stat) 22 (syst) 5 (lumi) fb (0.2) for p T(jet) > 20 GeV. |
|
|
Address |
[Bediaga, I.; De Miranda, J. M.; Ferreira Rodrigues, F.; Gomes, A.; Massafferri, A.; Osorio Rodrigues, B.; dos Reis, A. C.; Rodrigues, A. B.] CBPF, Rio De Janeiro, Brazil, Email: murilo.rangel@cern.ch |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
Springer |
Place of Publication |
|
Editor |
|
|
|
Language |
English |
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN ![sorted by ISSN field, descending order (down)](img/sort_desc.gif) |
1029-8479 |
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
|
|
|
Notes |
WOS:000348052200001 |
Approved |
no |
|
|
Is ISI |
yes |
International Collaboration |
yes |
|
|
Call Number |
IFIC @ pastor @ |
Serial |
2118 |
|
Permanent link to this record |