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Author |
Sanjuan, R.; Nebot, M.; Chirico, N.; Mansky, L.M.; Belshaw, R. |
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Title |
Viral Mutation Rates |
Type |
Journal Article |
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Year |
2010 |
Publication |
Journal of Virology |
Abbreviated Journal |
J. Virol. |
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Volume |
84 |
Issue |
19 |
Pages |
9733-9748 |
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Keywords |
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Abstract |
Accurate estimates of virus mutation rates are important to understand the evolution of the viruses and to combat them. However, methods of estimation are varied and often complex. Here, we critically review over 40 original studies and establish criteria to facilitate comparative analyses. The mutation rates of 23 viruses are presented as substitutions per nucleotide per cell infection (s/n/c) and corrected for selection bias where necessary, using a new statistical method. The resulting rates range from 10(-8) to 10(-6) s/n/c for DNA viruses and from 10(-6) to 10(-4) s/n/c for RNA viruses. Similar to what has been shown previously for DNA viruses, there appears to be a negative correlation between mutation rate and genome size among RNA viruses, but this result requires further experimental testing. Contrary to some suggestions, the mutation rate of retroviruses is not lower than that of other RNA viruses. We also show that nucleotide substitutions are on average four times more common than insertions/deletions (indels). Finally, we provide estimates of the mutation rate per nucleotide per strand copying, which tends to be lower than that per cell infection because some viruses undergo several rounds of copying per cell, particularly double-stranded DNA viruses. A regularly updated virus mutation rate data set will be available at www.uv.es/rsanjuan/virmut. |
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Address |
[Sanjuan, Rafael] Univ Valencia, Inst Cavanilles Biodiversitat & Biol Evolutiva, Dept Genet, Valencia 46980, Spain, Email: rafael.sanjuan@uv.es |
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Publisher |
Amer Soc Microbiology |
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Language |
English |
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Original Title |
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Abbreviated Series Title |
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ISSN |
0022-538x |
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Notes |
ISI:000282641800008 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number  |
IFIC @ elepoucu @ |
Serial |
371 |
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Author |
Doring, M.; Jido, D.; Oset, E. |
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Title |
Helicity amplitudes of the Lambda(1670) and two Lambda(1405) as dynamically generated resonances |
Type |
Journal Article |
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Year |
2010 |
Publication |
European Physical Journal A |
Abbreviated Journal |
Eur. Phys. J. A |
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Volume |
45 |
Issue |
3 |
Pages |
319-333 |
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Keywords |
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Abstract |
We determine the helicity amplitudes A(1/2) and radiative decay widths in the transition Lambda(1670) -> gamma Y (Y = Lambda or Sigma(0)). The Lambda(1670) is treated as a dynamically generated resonance in meson-baryon chiral dynamics. We obtain the radiative decay widths of the Lambda(1670) to gamma Lambda as 2 +/- 1 keV and to -gamma Sigma(0) as 120 +/- 50 keV. Also, the Q(2)-dependence of the helicity amplitudes A(1/2) is calculated. We find that the K Xi component in the Lambda(1670) structure, mainly responsible for the dynamical generation of this resonance, is also responsible for the significant suppression of the decay ratio Gamma(gamma A)/Gamma(gamma Sigma 0). A measurement of the ratio would, thus, provide direct access to the nature of the Lambda(1670). To compare the result for the Lambda(1670), we calculate the helicity amplitudes Lambda(1/2) for the two states of the Lambda(1405). Also, the analytic continuation of Feynman parameterized integrals of more complicated loop amplitudes to the complex plane is developed which allows for an internally consistent evaluation of A(1/2). |
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Address |
[Doering, M.] Forschungszentrum Julich, Inst Kernphys, D-52425 Julich, Germany, Email: m.doering@fz-jueiich.de |
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Publisher |
Springer |
Place of Publication |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1434-6001 |
ISBN |
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Conference |
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Notes |
ISI:000281972900006 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ elepoucu @ |
Serial |
372 |
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Author |
ANTARES Collaboration (Aguilar, J.A. et al); Bigongiari, C.; Dornic, D.; Emanuele, U.; Gomez-Gonzalez, J.P.; Hernandez-Rey, J.J.; Mangano, S.; Salesa, F.; Toscano, S.; Yepes, H.; Zornoza, J.D.; Zuñiga, J. |
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Title |
Zenith distribution and flux of atmospheric muons measured with the 5-line ANTARES detector |
Type |
Journal Article |
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Year |
2010 |
Publication |
Astroparticle Physics |
Abbreviated Journal |
Astropart Phys. |
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Volume |
34 |
Issue |
3 |
Pages |
179-184 |
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Keywords |
Atmospheric muons; Neutrino telescope; Depth-intensity relation |
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Abstract |
The ANTARES high-energy neutrino telescope is a three-dimensional array of about 900 photomultipliers distributed over 12 mooring lines installed in the Mediterranean Sea. Between February and November 2007 it acquired data in a 5-line configuration. The zenith angular distribution of the atmospheric muon flux and the associated depth-intensity relation are measured and compared with previous measurements and Monte Carlo expectations. An evaluation of the systematic effects due to uncertainties on environmental and detector parameters is presented. |
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Address |
[Bazzotti, M.; Biagi, S.; Carminati, G.; Giacomelli, G.; Margiotta, A.; Spurio, M.] Dipartimento Fis Univ, I-40127 Bologna, Italy, Email: Annarita.Margiotta@bo.infn.it |
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Corporate Author |
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Publisher |
Elsevier Science Bv |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0927-6505 |
ISBN |
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Conference |
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Notes |
ISI:000282496000005 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ elepoucu @ |
Serial |
373 |
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Author |
Taoso, M.; Iocco, F.; Meynet, G.; Bertone, G.; Eggenberger, P. |
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Title |
Effect of low mass dark matter particles on the Sun |
Type |
Journal Article |
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Year |
2010 |
Publication |
Physical Review D |
Abbreviated Journal |
Phys. Rev. D |
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Volume |
82 |
Issue |
8 |
Pages |
083509 - 14pp |
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Keywords |
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Abstract |
We study the effect of dark matter (DM) particles in the Sun, focusing, in particular, on the possible reduction of the solar neutrinos flux due to the energy carried away by DM particles from the innermost regions of the Sun, and to the consequent reduction of the temperature of the solar core. We find that in the very low-mass range between 4 and 10 GeV, recently advocated to explain the findings of the DAMA and CoGent experiments, the effects on neutrino fluxes are detectable only for DM models with a very small, or vanishing, self-annihilation cross section, such as the so-called asymmetric DM models, and we study the combination of DM masses and spin-dependent cross sections which can be excluded with current solar neutrino data. Finally, we revisit the recent claim that DM models with large self-interacting cross sections can lead to a modification of the position of the convective zone, alleviating or solving the solar composition problem. We show that when the "geometric'' upper limit on the capture rate is correctly taken into account, the effects of DM are reduced by orders of magnitude, and the position of the convective zone remains unchanged. |
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Address |
[Taoso, Marco] Univ Valencia, CSIC, IFIC, Ed Inst, Valencia 46071, Spain |
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Thesis |
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Publisher |
Amer Physical Soc |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1550-7998 |
ISBN |
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Conference |
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Notes |
ISI:000282680900002 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ elepoucu @ |
Serial |
369 |
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Author |
Staub, F.; Porod, W.; Herrmann, B. |
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Title |
The electroweak sector of the NMSSM at the one-loop level |
Type |
Journal Article |
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Year |
2010 |
Publication |
Journal of High Energy Physics |
Abbreviated Journal |
J. High Energy Phys. |
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Volume |
10 |
Issue |
10 |
Pages |
040 - 50pp |
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Keywords |
Supersymmetry Phenomenology |
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Abstract |
We present the electroweak spectrum for the Next-to-Minimal Supersymmetric Standard Model at the one-loop level, e. g. the masses of Higgs bosons, sleptons, charginos and neutralinos. For the numerical evaluation we present a mSUGRA variant with non-universal Higgs mass parameters squared and we compare our results with existing ones in the literature. Moreover, we briefly discuss the implications of our results for the calculation of the relic density. |
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Address |
[Staub, Florian; Porod, Werner; Herrmann, Bjoern] Univ Wurzburg, Inst Theoret Phys & Astrophys, D-97074 Wurzburg, Germany, Email: florian.staub@physik.uni-wuerzburg.de |
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Corporate Author |
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Thesis |
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Publisher |
Springer |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1126-6708 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
ISI:000284146800040 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ elepoucu @ |
Serial |
310 |
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