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Author |
Sanjuan, R.; Nebot, M.; Chirico, N.; Mansky, L.M.; Belshaw, R. |
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Title |
Viral Mutation Rates |
Type |
Journal Article |
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Year |
2010 |
Publication |
Journal of Virology |
Abbreviated Journal |
J. Virol. |
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| |
Volume |
84 |
Issue |
19 |
Pages |
9733-9748 |
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Keywords |
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Abstract |
Accurate estimates of virus mutation rates are important to understand the evolution of the viruses and to combat them. However, methods of estimation are varied and often complex. Here, we critically review over 40 original studies and establish criteria to facilitate comparative analyses. The mutation rates of 23 viruses are presented as substitutions per nucleotide per cell infection (s/n/c) and corrected for selection bias where necessary, using a new statistical method. The resulting rates range from 10(-8) to 10(-6) s/n/c for DNA viruses and from 10(-6) to 10(-4) s/n/c for RNA viruses. Similar to what has been shown previously for DNA viruses, there appears to be a negative correlation between mutation rate and genome size among RNA viruses, but this result requires further experimental testing. Contrary to some suggestions, the mutation rate of retroviruses is not lower than that of other RNA viruses. We also show that nucleotide substitutions are on average four times more common than insertions/deletions (indels). Finally, we provide estimates of the mutation rate per nucleotide per strand copying, which tends to be lower than that per cell infection because some viruses undergo several rounds of copying per cell, particularly double-stranded DNA viruses. A regularly updated virus mutation rate data set will be available at www.uv.es/rsanjuan/virmut. |
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Address |
[Sanjuan, Rafael] Univ Valencia, Inst Cavanilles Biodiversitat & Biol Evolutiva, Dept Genet, Valencia 46980, Spain, Email: rafael.sanjuan@uv.es |
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Publisher |
Amer Soc Microbiology |
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English |
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ISSN |
0022-538x |
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Notes |
ISI:000282641800008 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number  |
IFIC @ elepoucu @ |
Serial |
371 |
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Author |
Doring, M.; Jido, D.; Oset, E. |
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Title |
Helicity amplitudes of the Lambda(1670) and two Lambda(1405) as dynamically generated resonances |
Type |
Journal Article |
| |
Year |
2010 |
Publication |
European Physical Journal A |
Abbreviated Journal |
Eur. Phys. J. A |
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Volume |
45 |
Issue |
3 |
Pages |
319-333 |
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Keywords |
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Abstract |
We determine the helicity amplitudes A(1/2) and radiative decay widths in the transition Lambda(1670) -> gamma Y (Y = Lambda or Sigma(0)). The Lambda(1670) is treated as a dynamically generated resonance in meson-baryon chiral dynamics. We obtain the radiative decay widths of the Lambda(1670) to gamma Lambda as 2 +/- 1 keV and to -gamma Sigma(0) as 120 +/- 50 keV. Also, the Q(2)-dependence of the helicity amplitudes A(1/2) is calculated. We find that the K Xi component in the Lambda(1670) structure, mainly responsible for the dynamical generation of this resonance, is also responsible for the significant suppression of the decay ratio Gamma(gamma A)/Gamma(gamma Sigma 0). A measurement of the ratio would, thus, provide direct access to the nature of the Lambda(1670). To compare the result for the Lambda(1670), we calculate the helicity amplitudes Lambda(1/2) for the two states of the Lambda(1405). Also, the analytic continuation of Feynman parameterized integrals of more complicated loop amplitudes to the complex plane is developed which allows for an internally consistent evaluation of A(1/2). |
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Address |
[Doering, M.] Forschungszentrum Julich, Inst Kernphys, D-52425 Julich, Germany, Email: m.doering@fz-jueiich.de |
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Publisher |
Springer |
Place of Publication |
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English |
Summary Language |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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ISSN |
1434-6001 |
ISBN |
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Area |
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Expedition |
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Conference |
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Notes |
ISI:000281972900006 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ elepoucu @ |
Serial |
372 |
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Author |
ANTARES Collaboration (Aguilar, J.A. et al); Bigongiari, C.; Dornic, D.; Emanuele, U.; Gomez-Gonzalez, J.P.; Hernandez-Rey, J.J.; Mangano, S.; Salesa, F.; Toscano, S.; Yepes, H.; Zornoza, J.D.; Zuñiga, J. |
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Title |
Zenith distribution and flux of atmospheric muons measured with the 5-line ANTARES detector |
Type |
Journal Article |
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Year |
2010 |
Publication |
Astroparticle Physics |
Abbreviated Journal |
Astropart Phys. |
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Volume |
34 |
Issue |
3 |
Pages |
179-184 |
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Keywords |
Atmospheric muons; Neutrino telescope; Depth-intensity relation |
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Abstract |
The ANTARES high-energy neutrino telescope is a three-dimensional array of about 900 photomultipliers distributed over 12 mooring lines installed in the Mediterranean Sea. Between February and November 2007 it acquired data in a 5-line configuration. The zenith angular distribution of the atmospheric muon flux and the associated depth-intensity relation are measured and compared with previous measurements and Monte Carlo expectations. An evaluation of the systematic effects due to uncertainties on environmental and detector parameters is presented. |
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Address |
[Bazzotti, M.; Biagi, S.; Carminati, G.; Giacomelli, G.; Margiotta, A.; Spurio, M.] Dipartimento Fis Univ, I-40127 Bologna, Italy, Email: Annarita.Margiotta@bo.infn.it |
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Publisher |
Elsevier Science Bv |
Place of Publication |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0927-6505 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
ISI:000282496000005 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ elepoucu @ |
Serial |
373 |
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Author |
Taoso, M.; Iocco, F.; Meynet, G.; Bertone, G.; Eggenberger, P. |
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Title |
Effect of low mass dark matter particles on the Sun |
Type |
Journal Article |
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Year |
2010 |
Publication |
Physical Review D |
Abbreviated Journal |
Phys. Rev. D |
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Volume |
82 |
Issue |
8 |
Pages |
083509 - 14pp |
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Keywords |
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Abstract |
We study the effect of dark matter (DM) particles in the Sun, focusing, in particular, on the possible reduction of the solar neutrinos flux due to the energy carried away by DM particles from the innermost regions of the Sun, and to the consequent reduction of the temperature of the solar core. We find that in the very low-mass range between 4 and 10 GeV, recently advocated to explain the findings of the DAMA and CoGent experiments, the effects on neutrino fluxes are detectable only for DM models with a very small, or vanishing, self-annihilation cross section, such as the so-called asymmetric DM models, and we study the combination of DM masses and spin-dependent cross sections which can be excluded with current solar neutrino data. Finally, we revisit the recent claim that DM models with large self-interacting cross sections can lead to a modification of the position of the convective zone, alleviating or solving the solar composition problem. We show that when the "geometric'' upper limit on the capture rate is correctly taken into account, the effects of DM are reduced by orders of magnitude, and the position of the convective zone remains unchanged. |
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Address |
[Taoso, Marco] Univ Valencia, CSIC, IFIC, Ed Inst, Valencia 46071, Spain |
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Corporate Author |
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Thesis |
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Publisher |
Amer Physical Soc |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1550-7998 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
ISI:000282680900002 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ elepoucu @ |
Serial |
369 |
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| Permanent link to this record |
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Author |
Staub, F.; Porod, W.; Herrmann, B. |
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Title |
The electroweak sector of the NMSSM at the one-loop level |
Type |
Journal Article |
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Year |
2010 |
Publication |
Journal of High Energy Physics |
Abbreviated Journal |
J. High Energy Phys. |
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Volume |
10 |
Issue |
10 |
Pages |
040 - 50pp |
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Keywords |
Supersymmetry Phenomenology |
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Abstract |
We present the electroweak spectrum for the Next-to-Minimal Supersymmetric Standard Model at the one-loop level, e. g. the masses of Higgs bosons, sleptons, charginos and neutralinos. For the numerical evaluation we present a mSUGRA variant with non-universal Higgs mass parameters squared and we compare our results with existing ones in the literature. Moreover, we briefly discuss the implications of our results for the calculation of the relic density. |
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Address |
[Staub, Florian; Porod, Werner; Herrmann, Bjoern] Univ Wurzburg, Inst Theoret Phys & Astrophys, D-97074 Wurzburg, Germany, Email: florian.staub@physik.uni-wuerzburg.de |
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Corporate Author |
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Publisher |
Springer |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1126-6708 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
ISI:000284146800040 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ elepoucu @ |
Serial |
310 |
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| Permanent link to this record |
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Author |
ATLAS Collaboration (Abat, E. et al); Bernabeu Verdú, J.; Castillo Gimenez, V.; Costa, M.J.; Escobar, C.; Ferrer, A.; Garcia, C.; Gonzalez-Sevilla, S.; Higon-Rodriguez, E.; Lacasta, C.; Marti-Garcia, S.; Mitsou, V.A.; Ruiz, A.; Solans, C.; Valero, A.; Valls Ferrer, J.A. |
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Title |
Combined performance studies for electrons at the 2004 ATLAS combined test-beam |
Type |
Journal Article |
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Year |
2010 |
Publication |
Journal of Instrumentation |
Abbreviated Journal |
J. Instrum. |
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Volume |
5 |
Issue |
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Pages |
P11006 - 68pp |
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Keywords |
Particle tracking detectors; Transition radiation detectors; Calorimeters; Large detector systems for particle and astroparticle physics |
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Abstract |
In 2004 at the ATLAS (A Toroidal LHC ApparatuS) combined test beam, one slice of the ATLAS barrel detector (including an Inner Detector set-up and the Liquid Argon calorimeter) was exposed to particles from the H8 SPS beam line at CERN. It was the first occasion to test the combined electron performance of ATLAS. This paper presents results obtained for the momentum measurement p with the Inner Detector and for the performance of the electron measurement with the LAr calorimeter (energy E linearity and resolution) in the presence of a magnetic field in the Inner Detector for momenta ranging from 20 GeV/c to 100 GeV/c. Furthermore the particle identification capabilities of the Transition Radiation Tracker, Bremsstrahlungs-recovery algorithms relying on the LAr calorimeter and results obtained for the E/p ratio and a way how to extract scale parameters will be discussed. |
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Address |
Univ Alberta, Ctr Particle Phys, Dept Phys, Edmonton, AB T6G 2G7, Canada, Email: robert.froesch1@cern.ch |
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Corporate Author |
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Thesis |
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Publisher |
Iop Publishing Ltd |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1748-0221 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
ISI:000285051500031 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ elepoucu @ |
Serial |
311 |
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| Permanent link to this record |
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Author |
Gamermann, D.; Nieves, J.; Oset, E.; Ruiz Arriola, E. |
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Title |
Couplings in coupled channels versus wave functions: Application to the X(3872) resonance |
Type |
Journal Article |
| |
Year |
2010 |
Publication |
Physical Review D |
Abbreviated Journal |
Phys. Rev. D |
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Volume |
81 |
Issue |
1 |
Pages |
014029 - 14pp |
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Keywords |
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Abstract |
We perform an analytical study of the scattering matrix and bound states in problems with many physical coupled channels. We establish the relationship of the couplings of the states to the different channels, obtained from the residues of the scattering matrix at the poles, with the wave functions for the different channels. The couplings basically reflect the value of the wave functions around the origin in coordinate space. In the concrete case of the X(3872) resonance, understood as a bound state of D-0(D) over bar*(0) and D+D*(-) (and c.c. From now on, when we refer to D-0(D) over bar*(0), D+D*(-), or D (D) over bar* we are actually referring to the combination of these states with their complex conjugate in order to form a state with positive C-parity), with the D-0(D) over bar*(0) loosely bound, we find that the couplings to the two channels are essentially equal leading to a state of good isospin I = 0 character. This is in spite of having a probability for finding the D-0(D) over bar*(0) state much larger than for D+D*(-) since the loosely bound channel extends further in space. The analytical results, obtained with exact solutions of the Schrodinger equation for the wave functions, can be useful in general to interpret results found numerically in the study of problems with unitary coupled channels methods. |
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Address |
[Gamermann, D.; Nieves, J.; Oset, E.] Univ Valencia, Ctr Mixto, Inst Fis Corpuscular IFIC, CSIC,Inst Invest Paterna, Valencia 46071, Spain, Email: daniel.gamermann@ific.uv.es |
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Corporate Author |
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Thesis |
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Publisher |
Amer Physical Soc |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1550-7998 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
ISI:000284268800001 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
no |
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Call Number |
IFIC @ elepoucu @ |
Serial |
329 |
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| Permanent link to this record |
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Author |
BABAR Collaboration (del Amo Sanchez, P. et al); Lopez-March, N.; Martinez-Vidal, F.; Milanes, D.A.; Oyanguren, A. |
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Title |
Measurement of the absolute branching fractions for D-s(-) -> l(-) (nu)over-bar(l) and extraction of the decay constant f(Ds) |
Type |
Journal Article |
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Year |
2010 |
Publication |
Physical Review D |
Abbreviated Journal |
Phys. Rev. D |
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Volume |
82 |
Issue |
9 |
Pages |
091103 - 8pp |
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Keywords |
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Abstract |
The absolute branching fractions for the decays D-s(-) -> l(-) (nu) over bar (l) (l = e, mu, or tau) are measured using a data sample corresponding to an integrated luminosity of 521 fb(-1) collected at center-of-mass energies near 10.58 GeV with the BABAR detector at the PEP-II e(+)e(-) collider at SLAC. The number of D-s(-) mesons is determined by reconstructing the recoiling system DKX gamma in events of the type e(+)e(-) -> DKXDs*(-), where D-s*(-) -> D-s(-) gamma and X represents additional pions from fragmentation. The D-s(-) -> l(-) nu(l) events are detected by full or partial reconstruction of the recoiling system DKX gamma l. The branching fraction measurements are combined to determine the D-s(-) decay constant f(Ds) (258.6 +/- 6.4 +/- 7:5) MeV, where the first uncertainty is statistical and the second is systematic. |
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Address |
[Sanchez, P. del Amo; Lees, J. P.; Poireau, V.; Prencipe, E.; Tisserand, V.] Univ Savoie, CNRS, IN2P3, LAPP, F-74991 Annecy Le Vieux, France |
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Corporate Author |
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Thesis |
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Publisher |
Amer Physical Soc |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1550-7998 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
ISI:000284049300001 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ elepoucu @ |
Serial |
330 |
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| Permanent link to this record |
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Author |
Fogli, G.L.; Lisi, E.; Palazzo, A.; Rotunno, A.M. |
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Title |
Combined analysis of KamLAND and Borexino neutrino signals from Th and U decays in the Earth's interior |
Type |
Journal Article |
| |
Year |
2010 |
Publication |
Physical Review D |
Abbreviated Journal |
Phys. Rev. D |
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Volume |
82 |
Issue |
9 |
Pages |
093006 - 9pp |
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Keywords |
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Abstract |
The KamLAND and Borexino experiments have detected electron antineutrinos produced in the decay chains of natural thorium and uranium (Th and U geoneutrinos). We analyze the energy spectra of current geoneutrino data in combination with solar and long-baseline reactor neutrino data, with marginalized three-neutrino oscillation parameters. We consider the case with unconstrained Th and U event rates in KamLAND and Borexino, as well as cases with fewer degrees of freedom, as obtained by successively assuming for both experiments a common Th/U ratio, a common scaling of Th + U event rates, and a chondritic Th/U value. In combination, KamLAND and Borexino can reject the null hypothesis (no geoneutrino signal) at 5 sigma. Interesting bounds or indications emerge on the Th + U geoneutrino rates and on the Th/U ratio, in broad agreement with typical Earth model expectations. Conversely, the results disfavor the hypothesis of a georeactor in the Earth's core, if its power exceeds a few TW. The interplay of KamLAND and Borexino geoneutrino data is highlighted. |
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Address |
[Fogli, G. L.; Rotunno, A. M.] Dipartimento Interateneo Fis Michelangelo Merlin, I-70126 Bari, Italy |
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Corporate Author |
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Thesis |
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Publisher |
Amer Physical Soc |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1550-7998 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
ISI:000284144900001 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ elepoucu @ |
Serial |
331 |
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| Permanent link to this record |
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Author |
Fernandez-Martinez, E.; Giordano, G.; Mena, O.; Mocioiu, I. |
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Title |
Atmospheric neutrinos in ice and measurement of neutrino oscillation parameters |
Type |
Journal Article |
| |
Year |
2010 |
Publication |
Physical Review D |
Abbreviated Journal |
Phys. Rev. D |
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Volume |
82 |
Issue |
9 |
Pages |
093011 - 7pp |
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Keywords |
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Abstract |
The main goal of the IceCube Deep Core array is to search for neutrinos of astrophysical origins. Atmospheric neutrinos are commonly considered as a background for these searches. We show that the very high statistics atmospheric neutrino data can be used to obtain precise measurements of the main oscillation parameters. |
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Address |
[Fernandez-Martinez, Enrique] Werner Heisenberg Inst, Max Planck Inst Phys, D-80805 Munich, Germany |
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Thesis |
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Publisher |
Amer Physical Soc |
Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1550-7998 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
ISI:000284259000002 |
Approved |
no |
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Is ISI |
yes |
International Collaboration |
yes |
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Call Number |
IFIC @ elepoucu @ |
Serial |
332 |
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| Permanent link to this record |
