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Etxebeste, A., Barrio, J., Bernabeu, J., Lacasta, C., Llosa, G., Muñoz, E., et al. (2019). Study of sensitivity and resolution for full ring PET prototypes based on continuous crystals and analytical modeling of the light distribution. Phys. Med. Biol., 64(3), 035015–17pp.
Abstract: Sensitivity and spatial resolution are the main parameters to maximize in the performance of a PET scanner. For this purpose, detectors consisting of a combination of continuous crystals optically coupled to segmented photodetectors have been employed. With the use of continuous crystals the sensitivity is increased with respect to the pixelated crystals. In addition, spatial resolution is no longer limited to the crystal size. The main drawback is the difficulty in determining the interaction position. In this work, we present the characterization of the performance of a full ring based on cuboid continuous crystals coupled to SiPMs. To this end, we have employed the simulations developed in a previous work for our experimental detector head. Sensitivity could be further enhanced by using tapered crystals. This enhancement is obtained by increasing the solid angle coverage, reducing the wedge-shaped gaps between contiguous detectors. The performance of the scanners based on both crystal geometries was characterized following NEMA NU 4-2008 standardized protocol in order to compare them. An average sensitivity gain over the entire axial field of view of 13.63% has been obtained with tapered geometry while similar performance of the spatial resolution has been proven with both scanners. The activity at which NECR and true peak occur is smaller and the peak value is greater for tapered crystals than for cuboid crystals. Moreover, a higher degree of homogeneity was obtained in the sensitivity map due to the tighter packing of the crystals, which reduces the gaps and results in a better recovery of homogeneous regions than for the cuboid configuration. Some of the results obtained, such as spatial resolution, depend on the interaction position estimation and may vary if other method is employed.
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Etxebeste, A., Dauvergne, D., Fontana, M., Letang, J. M., Llosa, G., Muñoz, E., et al. (2020). CCMod: a GATE module for Compton camera imaging simulation. Phys. Med. Biol., 65(5), 055004–17pp.
Abstract: Compton cameras are gamma-ray imaging systems which have been proposed for a wide variety of applications such as medical imaging, nuclear decommissioning or homeland security. In the design and optimization of such a system Monte Carlo simulations play an essential role. In this work, we propose a generic module to perform Monte Carlo simulations and analyses of Compton Camera imaging which is included in the open-source GATE/Geant4 platform. Several digitization stages have been implemented within the module to mimic the performance of the most commonly employed detectors (e.g. monolithic blocks, pixelated scintillator crystals, strip detectors...). Time coincidence sorter and sequence coincidence reconstruction are also available in order to aim at providing modules to facilitate the comparison and reproduction of the data taken with different prototypes. All processing steps may be performed during the simulation (on-the-fly mode) or as a post-process of the output files (offline mode). The predictions of the module have been compared with experimental data in terms of energy spectra, angular resolution, efficiency and back-projection image reconstruction. Consistent results within a 3-sigma interval were obtained for the energy spectra except for low energies where small differences arise. The angular resolution measure for incident photons of 1275 keV was also in good agreement between both data sets with a value close to 13 degrees. Moreover, with the aim of demonstrating the versatility of such a tool the performance of two different Compton camera designs was evaluated and compared.
Keywords: Monte Carlo; simulation; gamma imaging; Compton camera
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Figueroa, D. G., Florio, A., Torrenti, F., & Valkenburg, W. (2023). CosmoLattice: A modern code for lattice simulations of scalar and gauge field dynamics in an expanding universe. Comput. Phys. Commun., 283, 108586–13pp.
Abstract: This paper describes CosmoGattice, a modern package for lattice simulations of the dynamics of interacting scalar and gauge fields in an expanding universe. CosmoGattice incorporates a series of features that makes it very versatile and powerful: i) it is written in C++ fully exploiting the object oriented programming paradigm, with a modular structure and a clear separation between the physics and the technical details, ii) it is MPI-based and uses a discrete Fourier transform parallelized in multiple spatial dimensions, which makes it specially appropriate for probing scenarios with well -separated scales, running very high resolution simulations, or simply very long ones, iii) it introduces its own symbolic language, defining field variables and operations over them, so that one can introduce differential equations and operators in a manner as close as possible to the continuum, iv) it includes a library of numerical algorithms, ranging from O(delta t(2)) to O(delta t(10)) methods, suitable for simulating global and gauge theories in an expanding grid, including the case of 'self-consistent' expansion sourced by the fields themselves. Relevant observables are provided for each algorithm (e.g. energy densities, field spectra, lattice snapshots) and we note that, remarkably, all our algorithms for gauge theories (Abelian or non-Abelian) always respect the Gauss constraint to machine precision. Program summary Program Title:: CosmoGattice CPC Library link to program files: https://doi .org /10 .17632 /44vr5xssc6 .1 Developer's repository link: http://github .com /cosmolattice /cosmolattice Licensing provisions: MIT Programming language: C++, MPI Nature of problem: The phenomenology of high energy physics in the early universe is typically characterized by non-linear dynamics, which cannot be captured accurately with analytical techniques. In order to fully understand the non-linearities developed in a given scenario, one needs to carry out lattice simulations. A number of public packages for lattice simulations have appeared over the years, but most of them are only capable of simulating scalar fields. However, realistic models of particle physics do contain other kind of field species, such as (Abelian or non-Abelian) gauge fields, whose non-linear dynamics can also play a relevant role in the early universe. Tensor modes representing gravitational waves are also naturally expected in many scenarios. Solution method: CosmoGattice represents a modern code for lattice simulations of scalar-gauge field theories in an expanding universe. It allows for the simulation of the evolution of interacting (singlet) scalar fields, charged scalar fields under U(1) and/or SU(2) gauge groups, and the corresponding associated Abelian and/or non-Abelian gauge fields. From version 1.1 onward, CosmoGattice also allows to simulate the production of gravitational waves. Simulations can be done either in a flat space-time background, or in a homogeneous and isotropic (spatially flat) expanding FLRW background. CosmoGattice provides symplectic integrators, with accuracy ranging from O (delta t(2)) up to O(delta t(10)), to simuate the non-linear dynamics of the appropriate fields in comoving three-dimensional lattices. The code is parallelized with MPI, and uses a discrete Fourier Transform parallelized in multiple spatial dimensions, which makes it a very powerful code for probing physical problems with well-separated scales. Moreover, the code has been designed as a `platform' to implement any system of dynamical equations suitable for discretization on a lattice.
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Gimenez-Alventosa, V., Gimenez, V., & Oliver, S. (2021). PenRed: An extensible and parallel Monte-Carlo framework for radiation transport based on PENELOPE. Comput. Phys. Commun., 267, 108065–12pp.
Abstract: Monte Carlo methods provide detailed and accurate results for radiation transport simulations. Unfortunately, the high computational cost of these methods limits its usage in real-time applications. Moreover, existing computer codes do not provide a methodology for adapting these kinds of simulations to specific problems without advanced knowledge of the corresponding code system, and this restricts their applicability. To help solve these current limitations, we present PenRed, a general-purpose, standalone, extensible and modular framework code based on PENELOPE for parallel Monte Carlo simulations of electron-photon transport through matter. It has been implemented in C++ programming language and takes advantage of modern object-oriented technologies. In addition, PenRed offers the capability to read and process DICOM images as well as to construct and simulate image-based voxelized geometries, so as to facilitate its usage in medical applications. Our framework has been successfully verified against the original PENELOPE Fortran code. Furthermore, the implemented parallelism has been tested showing a significant improvement in the simulation time without any loss in precision of results. Program summary Program title: PenRed: Parallel Engine for Radiation Energy Deposition. CPC Library link to program files: https://doi .org /10 .17632/rkw6tvtngy.1 Licensing provision: GNU Affero General Public License (AGPL). Programming language: C++ standard 2011. Nature of problem: Monte Carlo simulations usually require a huge amount of computation time to achieve low statistical uncertainties. In addition, many applications necessitate particular characteristics or the extraction of specific quantities from the simulation. However, most available Monte Carlo codes do not provide an efficient parallel and truly modular structure which allows users to easily customise their code to suit their needs without an in-depth knowledge of the code system. Solution method: PenRed is a fully parallel, modular and customizable framework for Monte Carlo simulations of the passage of radiation through matter. It is based on the PENELOPE [1] code system, from which inherits its unique physics models and tracking algorithms for charged particles. PenRed has been coded in C++ following an object-oriented programming paradigm restricted to the C++11 standard. Our engine implements parallelism via a double approach: on the one hand, by using standard C++ threads for shared memory, improving the access and usage of the memory, and, on the other hand, via the MPI standard for distributed memory infrastructures. Notice that both kinds of parallelism can be combined together in the same simulation. Moreover, both threads and MPI processes, can be balanced using the builtin load balance system (RUPER-LB [30]) to maximise the performance on heterogeneous infrastructures. In addition, PenRed provides a modular structure with methods designed to easily extend its functionality. Thus, users can create their own independent modules to adapt our engine to their needs without changing the original modules. Furthermore, user extensions will take advantage of the builtin parallelism without any extra effort or knowledge of parallel programming. Additional comments including restrictions and unusual features: PenRed has been compiled in linux systems withg++ of GCC versions 4.8.5, 7.3.1, 8.3.1 and 9; clang version 3.4.2 and intel C++ compiler (icc) version 19.0.5.281. Since it is a C++11-standard compliant code, PenRed should be able to compile with any compiler with C++11 support. In addition, if the code is compiled without MPI support, it does not require any non standard library. To enable MPI capabilities, the user needs to install whatever available MPI implementation, such as openMPI [24] or mpich [25], which can be found in the repositories of any linux distribution. Finally, to provide DICOM processing support, PenRed can be optionally compiled using the dicom toolkit (dcmtk) [32] library. Thus, PenRed has only two optional dependencies, an MPI implementation and the dcmtk library.
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Guadilla, V. et al, Algora, A., Tain, J. L., Agramunt, J., Jordan, D., Monserrate, M., et al. (2017). Characterization of a cylindrical plastic beta-detector with Monte Carlo simulations of optical photons. Nucl. Instrum. Methods Phys. Res. A, 854, 134–138.
Abstract: In this work we report on the Monte Carlo study performed to understand and reproduce experimental measurements of a new plastic beta-detector with cylindrical geometry. Since energy deposition simulations differ from the experimental measurements for such a geometry, we show how the simulation of production and transport of optical photons does allow one to obtain the shapes of the experimental spectra. Moreover, taking into account the computational effort associated with this kind of simulation, we develop a method to convert the simulations of energy deposited into light collected, depending only on the interaction point in the detector. This method represents a useful solution when extensive simulations have to be done, as in the case of the calculation of the response function of the spectrometer in a total absorption gamma-ray spectroscopy analysis.
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