Rodriguez-Alvarez, M. J., Sanchez, F., Soriano, A., & Iborra, A. (2010). Sparse Givens resolution of large system of linear equations: Applications to image reconstruction. Math. Comput. Model., 52(7-8), 1258–1264.
Abstract: In medicine, computed tomographic images are reconstructed from a large number of measurements of X-ray transmission through the patient (projection data). The mathematical model used to describe a computed tomography device is a large system of linear equations of the form AX = B. In this paper we propose the QR decomposition as a direct method to solve the linear system. QR decomposition can be a large computational procedure. However, once it has been calculated for a specific system, matrices Q and R are stored and used for any acquired projection on that system. Implementation of the QR decomposition in order to take more advantage of the sparsity of the system matrix is discussed.
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Roszkowski, L., Ruiz de Austri, R., & Trotta, R. (2010). Efficient reconstruction of constrained MSSM parameters from LHC data: A case study. Phys. Rev. D, 82(5), 055003–12pp.
Abstract: We present an efficient method of reconstructing the parameters of the constrained MSSM from assumed future LHC data, applied both on their own right and in combination with the cosmological determination of the relic dark matter abundance. Focusing on the ATLAS SU3 benchmark point, we demonstrate that our simple Gaussian approximation can recover the values of its parameters remarkably well. We examine two popular noninformative priors and obtain very similar results, although when we use an informative, naturalness-motivated prior, we find some sizeable differences. We show that a further strong improvement in reconstructing the SU3 parameters can by achieved by applying additional information about the relic abundance at the level of WMAP accuracy, although the expected data from Planck will have only a very limited additional impact. Further external data may be required to break some remaining degeneracies. We argue that the method presented here is applicable to a wide class of low-energy effective supersymmetric models, as it does not require one to deal with purely experimental issues, e.g., detector performance, and has the additional advantages of computational efficiency. Furthermore, our approach allows one to distinguish the effect of the model's internal structure and of the external data on the final parameters constraints.
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Sanjuan, R., Nebot, M., Chirico, N., Mansky, L. M., & Belshaw, R. (2010). Viral Mutation Rates. J. Virol., 84(19), 9733–9748.
Abstract: Accurate estimates of virus mutation rates are important to understand the evolution of the viruses and to combat them. However, methods of estimation are varied and often complex. Here, we critically review over 40 original studies and establish criteria to facilitate comparative analyses. The mutation rates of 23 viruses are presented as substitutions per nucleotide per cell infection (s/n/c) and corrected for selection bias where necessary, using a new statistical method. The resulting rates range from 10(-8) to 10(-6) s/n/c for DNA viruses and from 10(-6) to 10(-4) s/n/c for RNA viruses. Similar to what has been shown previously for DNA viruses, there appears to be a negative correlation between mutation rate and genome size among RNA viruses, but this result requires further experimental testing. Contrary to some suggestions, the mutation rate of retroviruses is not lower than that of other RNA viruses. We also show that nucleotide substitutions are on average four times more common than insertions/deletions (indels). Finally, we provide estimates of the mutation rate per nucleotide per strand copying, which tends to be lower than that per cell infection because some viruses undergo several rounds of copying per cell, particularly double-stranded DNA viruses. A regularly updated virus mutation rate data set will be available at www.uv.es/rsanjuan/virmut.
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Sarkar, S., Sun, B. X., Oset, E., & Vicente Vacas, M. J. (2010). Dynamically generated resonances from the vector octet-baryon decuplet interaction. Eur. Phys. J. A, 44(3), 431–443.
Abstract: We study the interaction of the octet of vector mesons with the decuplet of baryons using Lagrangians of the hidden gauge theory for vector interactions. The unitary amplitudes in coupled channels develop poles that can be associated with some known baryonic resonances, while there are predictions for new ones at the energy frontier of the experimental research. The work offers guidelines on how to search for these resonances.
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SciBooNE Collaboration(Kurimoto, Y. et al), Catala-Perez, J., Gomez-Cadenas, J. J., & Sorel, M. (2010). Improved measurement of neutral current coherent pi(0) production on carbon in a few-GeV neutrino beam. Phys. Rev. D, 81(11), 111102–6pp.
Abstract: The SciBooNE Collaboration reports a measurement of neutral current coherent pi(0) production on carbon by a muon neutrino beam with average energy 0.8 GeV. The separation of coherent from inclusive pi(0) production has been improved by detecting recoil protons from resonant pi(0) production. We measure the ratio of the neutral current coherent pi(0) production to total charged current cross sections to be 1.16 +/- 0.24) x 10(-2). The ratio of charged current coherent pi(+) to neutral current coherent pi(0) production is calculated to be 0.14(-0.28)(+0.30), using our published charged current coherent pion measurement.
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